Glyma19g44540 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g44540

Feature Type:	gene_model
Chromosome:	Gm19
Start:	49919915
stop:	49921974
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g44540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G01300	AT	Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein \| chr1:117065-118522 FORWARD LENGTH=485	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004190	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity	SoyBase	N/A	ISS
KOG1339	KOG	Aspartyl protease	JGI		ISS
PTHR13683	Panther	ASPARTYL PROTEASES	JGI		ISS
PTHR13683:SF98	Panther	CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED	JGI		ISS
PF00026	PFAM	Eukaryotic aspartyl protease	JGI		ISS
UniRef100_B9SBG8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aspartic proteinase nepenthesin-1, putative n=1 Tax=Ricinus communis RepID=B9SBG8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1NCM4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCM4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g44540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g44540

Paralog	Evidence	Comments
Glyma03g41880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g44540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g256400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g44540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g44540

Limit To All Plant Sequences

>Glyma19g44540.1   sequence type=CDS   gene model=Glyma19g44540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGCAAGAAAAAGACAACAAATTGCCTTCTCTTCCTGTTCCTCTCCCTCACCCTCTCTCTCTCTCTCTCCGCCGCATTACAACTCCAAACCCAAACCTTGCCCCTCCACTCCCTCCCCCACCCACCCGCAATCTCATGGCCCGAATCCGAATCCGAACCCGACCCAGAAGAAGAAGCTCTCTCACTTCACCTCCACCACATAGACGCTCTCTCCTCCAACAAAACCCCGGAGCAGCTCTTCCAGCTCAGGCTCCAACGCGACGCCAAGAGAGTTGAAGGTGTAGTCGCACTCGCAGCTCTGAACCAAAGCCACGCTCGCAGATCCGGCTCCAGTTTCAGTAGCTCCATCATTTCGGGCTTAGCACAAGGTAGCGGTGAGTACTTCACGCGCATAGGCGTAGGCACACCCGCAAGGTACGTCTACATGGTTTTAGACACCGGAAGCGACGTCGTTTGGCTCCAATGCGCCCCTTGCCGCAAATGCTACACCCAAGCCGACCCCGTTTTTGACCCCACCAAATCCCGAACCTACGCCGGAATCCCCTGCGGGGCCCCTCTCTGCCGCCGCTTGGACTCCCCCGGCTGCAACAACAAGAACAAGGTTTGCCAGTACCAGGTTTCCTACGGCGACGGCTCCTTCACATTCGGCGATTTCTCCACCGAAACGCTCACGTTTCGAAGAACCAGAGTCACGCGCGTCGCGCTCGGCTGCGGCCACGACAATGAAGGACTCTTTATCGGCGCTGCTGGGCTTTTGGGCCTGGGCCGTGGGAGGTTATCGTTTCCGGTCCAGACCGGTCGCCGGTTCAACCAGAAATTCTCTTACTGCCTCGTCGACCGTTCCGCTTCGGCCAAACCCTCCTCTGTCGTTTTCGGAGATTCCGCTGTTTCCCGAACCGCGCGCTTCACTCCTCTTATAAAAAACCCCAAGCTCGACACCTTCTACTACCTCGAGCTCCTCGGGATCAGCGTCGGCGGCTCGCCGGTGCGCGGCCTCTCCGCCTCGCTCTTCCGCCTCGACGCAGCGGGAAACGGCGGCGTCATCATCGACTCGGGCACCTCCGTGACCCGGCTCACCCGACCCGCCTACATTGCCCTCCGAGACGCCTTCCGCGTCGGGGCCTCGCATCTGAAGCGTGCAGCGGAGTTCTCGCTCTTCGACACGTGTTTCGACCTGTCCGGGCTCACGGAGGTGAAGGTGCCCACGGTGGTGCTGCATTTCCGAGGTGCCGACGTGTCATTGCCGGCGACGAATTACTTGATTCCGGTGGATAACAGTGGGAGCTTCTGCTTCGCGTTTGCGGGAACTATGAGCGGTTTGTCCATAATTGGTAACATCCAACAACAAGGGTTCCGGGTCTCCTTCGACCTTGCGGGTTCTCGGGTCGGGTTTGCCCCTAGAGGTTGCGTTTGA

Predicted protein sequences of Glyma19g44540

Limit To All Plant Sequences

>Glyma19g44540.1   sequence type=predicted peptide   gene model=Glyma19g44540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGKKKTTNCLLFLFLSLTLSLSLSAALQLQTQTLPLHSLPHPPAISWPESESEPDPEEEALSLHLHHIDALSSNKTPEQLFQLRLQRDAKRVEGVVALAALNQSHARRSGSSFSSSIISGLAQGSGEYFTRIGVGTPARYVYMVLDTGSDVVWLQCAPCRKCYTQADPVFDPTKSRTYAGIPCGAPLCRRLDSPGCNNKNKVCQYQVSYGDGSFTFGDFSTETLTFRRTRVTRVALGCGHDNEGLFIGAAGLLGLGRGRLSFPVQTGRRFNQKFSYCLVDRSASAKPSSVVFGDSAVSRTARFTPLIKNPKLDTFYYLELLGISVGGSPVRGLSASLFRLDAAGNGGVIIDSGTSVTRLTRPAYIALRDAFRVGASHLKRAAEFSLFDTCFDLSGLTEVKVPTVVLHFRGADVSLPATNYLIPVDNSGSFCFAFAGTMSGLSIIGNIQQQGFRVSFDLAGSRVGFAPRGCV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain