SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g44470

Feature Type:gene_model
Chromosome:Gm19
Start:49887416
stop:49889355
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g44470
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46495AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr2:19084134-19085704 REVERSE LENGTH=372 SoyBaseE_val: 1.00E-90ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR22764Panther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). JGI ISS
PTHR22764:SF50Panther PROTEIN BINDING / ZINC ION BINDING JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_G8A2W4UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G8A2W4_MEDTR SoyBaseE_val: 4.00E-154ISS
UniRef100_I1NCL4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCL4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g44470
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g44470 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g255700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g44470
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g44470
>Glyma19g44470.1   sequence type=CDS   gene model=Glyma19g44470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATCTTGAAGGTCCTCTTCCACTTCTTCATATTTTTTCATGTCACATATGCATCAGATGACTGCAAATATTATTCTTGGTGCAGTGACAATAACATCCTTATTCGTTTCCCCTTTCAAATAGAAGGTCACCAACATCCTTATTGCGGCGGCTATCCTGGTTTCAAATTAACTTGCACCAATGATAGCAAAACAGTTATTAAACTTCCATACACGGGAAAGTTCATTGTCCGCAACATCAACTACCTCAGACAACAGATACAAGTCTATGACCCTGATAATTGCCTTCCAAAACGTCTTCTAAGCCTCAATCTTTCAGGCTCTCCCTTTGTTGCTGCTTCACTCCGCAACTACACCTTCTTAAGATGCCCAACTCGGAACGCAGGGTCACAATTCATTCCCATTGACTGTCTTAGCAATTCTACATCTTTCGTATCAGCTATTCTTTCAGTGAACTTGCCCAATCCATTGCCCGAGTCTTGCCATGTTATTAAGAAGCTCACATTTCCAGTTTCAAGGCCGGGACCATATGAGGAGATTTTCAGAGATGACCTTAGTGGAGATCTTCGATTAACATGGCATGCACCTGACTGTAGATATTGTGAATCACAAGAGGCCTTGTGCGGATTTGAGAGCATAAACAGTGATCAAGTTCGTTGTTTCTTTGATTACCAAACAGCTCCTCCACAACATGGTCTTCGAGTATTTGGAATCATCACATCATCTATTGTGGGACCAGCTATCATCTTTGTCATTGCAATTGCATGCTACGCGTCCTTAAAGTACAGAAGAGGCAATACAGCCAGAATTGCTGCTGCACAGAGGTCGGAACCAAGTGCAATATCACCCCAACCTTCCATTGCTACGATGGGCTTGGATGATTCTACAATCGAGTCTTATCAGAAACTTGTACTAGGGGAAAGCCGACGAGTGCCTGGACCCAATGACGGATGTTGCACCATATGCTTGTCAGAGTATAAAACCAAAGACACAATCAGATGCATTCCTGAGTGTGCACATTGTTTCCATGCCGAATGCATAGATGAATGGCTTCGCATGAATAGCACATGCCCCGTTTGCCGCAACTCCCCCTCCCATCCTTCTACTGCTCAAGTTATGGCCAGTGATCCTTGA
Predicted protein sequences of Glyma19g44470
>Glyma19g44470.1   sequence type=predicted peptide   gene model=Glyma19g44470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDILKVLFHFFIFFHVTYASDDCKYYSWCSDNNILIRFPFQIEGHQHPYCGGYPGFKLTCTNDSKTVIKLPYTGKFIVRNINYLRQQIQVYDPDNCLPKRLLSLNLSGSPFVAASLRNYTFLRCPTRNAGSQFIPIDCLSNSTSFVSAILSVNLPNPLPESCHVIKKLTFPVSRPGPYEEIFRDDLSGDLRLTWHAPDCRYCESQEALCGFESINSDQVRCFFDYQTAPPQHGLRVFGIITSSIVGPAIIFVIAIACYASLKYRRGNTARIAAAQRSEPSAISPQPSIATMGLDDSTIESYQKLVLGESRRVPGPNDGCCTICLSEYKTKDTIRCIPECAHCFHAECIDEWLRMNSTCPVCRNSPSHPSTAQVMASDP*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo