SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G01000 | AT | Annotation by Michelle Graham. TAIR10: Ubiquitin-like superfamily protein | chr4:432186-433727 REVERSE LENGTH=415 | SoyBase | E_val: 4.00E-100 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2827 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12786 | Panther | SPLICING FACTOR SF3A-RELATED | JGI | ISS | |
| PTHR12786:SF1 | Panther | gb def: involved in pre-spliceosome assembly, important for u2 snrnp addition, prp9p sa | JGI | ISS | |
| UniRef100_I1NCL2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCL2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SV28 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT4g01000/F3I3_20 n=1 Tax=Arabidopsis thaliana RepID=Q9SV28_ARATH | SoyBase | E_val: 2.00E-97 | ISS |
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Glyma19g44460 not represented in the dataset |
Glyma19g44460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g41810 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g255600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g44460.2 sequence type=transcript gene model=Glyma19g44460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTAAGTTGAATTTCCTCCATATATTGAAGCTTCGATGAGGCCCTATTAATAATACGCGCAAAACAAATTGAAGAAATTTAAAATTATTTACATATTACACACATCGATTCTCACAAACATATAATTCATCCCTCATTTCTCTTTTCGTTCTCTCCAATTTCCCGAAACCCTAATTTCCTCAATCCTGGTTTTGGAATTCGACAATGGAGCAGAAGAGGAGCAGCAAGATGTACAACCTGTTCGTGAAGCACTTGGACGGGAAAACCCTAACCCTCCTATTCCCCTCTCCGATCCTCTACGCGAGTTCCATCAAGGATCGCCTCTTCCAACTCACTGGAATCCCCGCCCACCACCAGCGCCTCGTCACCGGCTGTCGCCACCTCAACGATGACAAATCCGCTATCCAGTGCTCCCCGGGGGACGGCAACATGTTTCCCTCCGTGCGCCTCCTCCTGCGCCTCAAGGGCGGCAAGGGAGGCTTTGGCTCGCTTCTCCGTGGCGCCGCCACCAAGGCCGGCCAGAAGAAGACCAACAATTTCGACGCGTGCCGCGACATGAGTGGCCGGAGGCTGAGGCACGTCAACGCCGAGAAGAGGTTGGAGGAATGGAAGGCCGGAGAAGAGGAGAGGAAGCTCGAGAAGGTGGCCGAGGAGTTTCTCAAGAAGCAGATGAAGAAGGGCAAGGGAAAGGGTAAGGGTGAAGGTGACGGTGAGGCCCACAAGTATGTCGCAAAATATAGGGAGGAATCTGAACGTTGTGTTGCCGAGGTTGCCTTGTCTGTTAAAGAGGCTCTCACTGCCAAGCGCAAGAGCCCTTCACAACCCCACCATGATGCTAAGAAGTTGAAAATATGGATGGGGAAGAGGAAATTGAATGAAAGTGATAGTGATTATAGTGATGATTCTGATGAAGAGGGGGAGATGGAGAAATCGGAATTGTTGAATGGCCCGAATGAGTTGGGCTCAAATAAGGCTGAGGGCAGTTTGGGTTCGGTAAATGGGGGCGGAGGCTCTTCTGGTGCTGGCTCGTGTGAAAGTGGGTCTGAAGAAGAGAAGGAAACTGCTGTGGATGGAAATGTGGTATCTGTTGGGATGCTGAGTGGTGAAATTATTCACGCCACAGCTGAACCTGTGATAATCAATGAGGCTACTGAAATGCCAAAGGGGTCGGTGGTTGCTGAAGATAATCAGGATTGTCATGGAGGTGTGTCTGACAAGTTTGATGGTACTGTGAATCAGGCCTTGAATGTTATGGGCTCTGAAACCGTGGCTAGTGCTGGTGAATCTAATGATATGGAAATTGATGGATCTCTTGAGCATAAAGCAACTGTCAATGAAGGAAGTTCACCAAGCACTAGTGTTCCTGTGTTGGAGGAGCCCCTGAATTTTGATGCCTTTAATTCAGCTGCCGAACTTGAGGTATGTTTTCAGTAGGATCCTCTGGACTTCTGTTTGTCTGTGTGGTACCCTTTGCTTTAAATAGGATTTAAAGAAGG
>Glyma19g44460.1 sequence type=CDS gene model=Glyma19g44460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCAGAAGAGGAGCAGCAAGATGTACAACCTGTTCGTGAAGCACTTGGACGGGAAAACCCTAACCCTCCTATTCCCCTCTCCGATCCTCTACGCGAGTTCCATCAAGGATCGCCTCTTCCAACTCACTGGAATCCCCGCCCACCACCAGCGCCTCGTCACCGGCTGTCGCCACCTCAACGATGACAAATCCGCTATCCAGTGCTCCCCGGGGGACGGCAACATGTTTCCCTCCGTGCGCCTCCTCCTGCGCCTCAAGGGCGGCAAGGGAGGCTTTGGCTCGCTTCTCCGTGGCGCCGCCACCAAGGCCGGCCAGAAGAAGACCAACAATTTCGACGCGTGCCGCGACATGAGTGGCCGGAGGCTGAGGCACGTCAACGCCGAGAAGAGGTTGGAGGAATGGAAGGCCGGAGAAGAGGAGAGGAAGCTCGAGAAGGTGGCCGAGGAGTTTCTCAAGAAGCAGATGAAGAAGGGCAAGGGAAAGGGTAAGGGTGAAGGTGACGGTGAGGCCCACAAGTATGTCGCAAAATATAGGGAGGAATCTGAACGTTGTGTTGCCGAGGTTGCCTTGTCTGTTAAAGAGGCTCTCACTGCCAAGCGCAAGAGCCCTTCACAACCCCACCATGATGCTAAGAAGTTGAAAATATGGATGGGGAAGAGGAAATTGAATGAAAGTGATAGTGATTATAGTGATGATTCTGATGAAGAGGGGGAGATGGAGAAATCGGAATTGTTGAATGGCCCGAATGAGTTGGGCTCAAATAAGGCTGAGGGCAGTTTGGGTTCGGTAAATGGGGGCGGAGGCTCTTCTGGTGCTGGCTCGTGTGAAAGTGGGTCTGAAGAAGAGAAGGAAACTGCTGTGGATGGAAATGTGGTATCTGTTGGGATGCTGAGTGGTGAAATTATTCACGCCACAGCTGAACCTGTGATAATCAATGAGGCTACTGAAATGCCAAAGGGGTCGGTGGTTGCTGAAGATAATCAGGATTGTCATGGAGGTGTGTCTGACAAGTTTGATGGTACTGTGAATCAGGCCTTGAATGTTATGGGCTCTGAAACCGTGGCTAGTGCTGGTGAATCTAATGATATGGAAATTGATGGATCTCTTGAGCATAAAGCAACTGTCAATGAAGGAAGTTCACCAAGCACTAGTGTTCCTGTGTTGGAGGAGCCCCTGAATTTTGATGCCTTTAATTCAGCTGCCGAACTTGAGGTTCTTGGCTTGGAAAGGTTGAAGTCTGAACTGCAGTCACGTGGGTTAAAATGTGGAGGTACTTTGATGGAGCGTGCTGCCAGGCTTTTTCTCTTAAAATCAACTCCCCTGGATGAACTTCCAAAGAAGCTGATTGCGAAGAAGTAA >Glyma19g44460.2 sequence type=CDS gene model=Glyma19g44460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCAGAAGAGGAGCAGCAAGATGTACAACCTGTTCGTGAAGCACTTGGACGGGAAAACCCTAACCCTCCTATTCCCCTCTCCGATCCTCTACGCGAGTTCCATCAAGGATCGCCTCTTCCAACTCACTGGAATCCCCGCCCACCACCAGCGCCTCGTCACCGGCTGTCGCCACCTCAACGATGACAAATCCGCTATCCAGTGCTCCCCGGGGGACGGCAACATGTTTCCCTCCGTGCGCCTCCTCCTGCGCCTCAAGGGCGGCAAGGGAGGCTTTGGCTCGCTTCTCCGTGGCGCCGCCACCAAGGCCGGCCAGAAGAAGACCAACAATTTCGACGCGTGCCGCGACATGAGTGGCCGGAGGCTGAGGCACGTCAACGCCGAGAAGAGGTTGGAGGAATGGAAGGCCGGAGAAGAGGAGAGGAAGCTCGAGAAGGTGGCCGAGGAGTTTCTCAAGAAGCAGATGAAGAAGGGCAAGGGAAAGGGTAAGGGTGAAGGTGACGGTGAGGCCCACAAGTATGTCGCAAAATATAGGGAGGAATCTGAACGTTGTGTTGCCGAGGTTGCCTTGTCTGTTAAAGAGGCTCTCACTGCCAAGCGCAAGAGCCCTTCACAACCCCACCATGATGCTAAGAAGTTGAAAATATGGATGGGGAAGAGGAAATTGAATGAAAGTGATAGTGATTATAGTGATGATTCTGATGAAGAGGGGGAGATGGAGAAATCGGAATTGTTGAATGGCCCGAATGAGTTGGGCTCAAATAAGGCTGAGGGCAGTTTGGGTTCGGTAAATGGGGGCGGAGGCTCTTCTGGTGCTGGCTCGTGTGAAAGTGGGTCTGAAGAAGAGAAGGAAACTGCTGTGGATGGAAATGTGGTATCTGTTGGGATGCTGAGTGGTGAAATTATTCACGCCACAGCTGAACCTGTGATAATCAATGAGGCTACTGAAATGCCAAAGGGGTCGGTGGTTGCTGAAGATAATCAGGATTGTCATGGAGGTGTGTCTGACAAGTTTGATGGTACTGTGAATCAGGCCTTGAATGTTATGGGCTCTGAAACCGTGGCTAGTGCTGGTGAATCTAATGATATGGAAATTGATGGATCTCTTGAGCATAAAGCAACTGTCAATGAAGGAAGTTCACCAAGCACTAGTGTTCCTGTGTTGGAGGAGCCCCTGAATTTTGATGCCTTTAATTCAGCTGCCGAACTTGAGGTATGTTTTCAGTAG
>Glyma19g44460.1 sequence type=predicted peptide gene model=Glyma19g44460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQKRSSKMYNLFVKHLDGKTLTLLFPSPILYASSIKDRLFQLTGIPAHHQRLVTGCRHLNDDKSAIQCSPGDGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGEEERKLEKVAEEFLKKQMKKGKGKGKGEGDGEAHKYVAKYREESERCVAEVALSVKEALTAKRKSPSQPHHDAKKLKIWMGKRKLNESDSDYSDDSDEEGEMEKSELLNGPNELGSNKAEGSLGSVNGGGGSSGAGSCESGSEEEKETAVDGNVVSVGMLSGEIIHATAEPVIINEATEMPKGSVVAEDNQDCHGGVSDKFDGTVNQALNVMGSETVASAGESNDMEIDGSLEHKATVNEGSSPSTSVPVLEEPLNFDAFNSAAELEVLGLERLKSELQSRGLKCGGTLMERAARLFLLKSTPLDELPKKLIAKK* >Glyma19g44460.2 sequence type=predicted peptide gene model=Glyma19g44460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQKRSSKMYNLFVKHLDGKTLTLLFPSPILYASSIKDRLFQLTGIPAHHQRLVTGCRHLNDDKSAIQCSPGDGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGEEERKLEKVAEEFLKKQMKKGKGKGKGEGDGEAHKYVAKYREESERCVAEVALSVKEALTAKRKSPSQPHHDAKKLKIWMGKRKLNESDSDYSDDSDEEGEMEKSELLNGPNELGSNKAEGSLGSVNGGGGSSGAGSCESGSEEEKETAVDGNVVSVGMLSGEIIHATAEPVIINEATEMPKGSVVAEDNQDCHGGVSDKFDGTVNQALNVMGSETVASAGESNDMEIDGSLEHKATVNEGSSPSTSVPVLEEPLNFDAFNSAAELEVCFQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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