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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G61720 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr1:22791326-22792757 REVERSE LENGTH=340 | SoyBase | E_val: 2.00E-48 | ISS |
| GO:0009964 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0044237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0033729 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: anthocyanidin reductase activity | SoyBase | N/A | ISS |
| GO:0050662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: coenzyme binding | SoyBase | N/A | ISS |
| KOG1502 | KOG | Flavonol reductase/cinnamoyl-CoA reductase | JGI | ISS | |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | ISS | |
| PTHR10366:SF79 | Panther | NAD-DEPENDENT EPIMERASE/DEHYDRATASE | JGI | ISS | |
| PF01370 | PFAM | NAD dependent epimerase/dehydratase family | JGI | ISS | |
| UniRef100_G7IPP8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dihydroflavonol-4-reductase n=1 Tax=Medicago truncatula RepID=G7IPP8_MEDTR | SoyBase | E_val: 6.00E-175 | ISS |
| UniRef100_I1NCJ4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCJ4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g44360 not represented in the dataset |
Glyma19g44360 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g254600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g44360.1 sequence type=CDS gene model=Glyma19g44360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAGTAGTGAGGGAATTAGGTGTAAGGTATGCGTGACCGGCGGTGCTAGTTACATAGGCTCTTGCCTTGTCAAGAAGCTTCTGCAAAAGGGCTACACCGTCCACTCCACCCTCAGAAACTTTAAGGACGAGTCAAAGATAGGCCTTCTGAGAGGGTTGCCTCATGCTAATGATGAGAGACTGGTGTTATTTGAAGCAGACATATATAAACCAGACGAGTACGAGCCAGCAATTCAAGGCTGTGAGATTGTCTTTCACGTTGCTACTCCCTATGAACATCAATCGGATTCTCTGCTGTTTAAGAACACAAGTGAAGCTGCAATAGCGGGGGTGAAAAGCATAGCTAAGTATTGCATTAAATCGGGAACGGTGAGACGGCTAATTTACACTGCCTCGGTGGTTGCTGCTTCTCCGCTTAAAGATGACGGCTCTGGTTTTAAAGATTTCATTGATGAAACTTGTTGGACGCCTCTCAACCTTTCAATGGGGACTCTTCATCAGTGGTACACTGATTCGAAGACACAGGCTGAGAGAGAGTTGCTGAGTTATGGAAGCGGTGAAAATGGTGGGGGATTGGAGGTGGTGAGTTTGGCTTGTGGCCTGGTGGGAGGGGATACTCTTCTGAGTTACACACCCTTGAGTGTTACATTGCTTTCCTCTCAGGTACAAGACAATGAAGCCGCATACCAGTCTTTGAAGTTCTTAGAAGAATTGGATGGAAAAATCCCAATAGTTCACGTTGAAGATGTCTGTGAAGCTCACATCTTCTGCGCGGAGAATCCATCAATTAATGGCAGATTCTTGGTTGCAAGCTCATATGCATCATCCGCAGAAATTGCAAATTATTATCTTCAAGCCTATCCCGAATTCAATTTGAACCACAAGTATTTGGAAGGGCCAAAAAGGGATATAAAATGGGCGTCAAGGAAGCTGACAGACAACGGGTTTGTGTACAAAAATGACCTGAAGATGATATTGGATGATTGTATCAGATGCGCAAGAAGGATGGGCGACCTCTAG
>Glyma19g44360.1 sequence type=predicted peptide gene model=Glyma19g44360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESSEGIRCKVCVTGGASYIGSCLVKKLLQKGYTVHSTLRNFKDESKIGLLRGLPHANDERLVLFEADIYKPDEYEPAIQGCEIVFHVATPYEHQSDSLLFKNTSEAAIAGVKSIAKYCIKSGTVRRLIYTASVVAASPLKDDGSGFKDFIDETCWTPLNLSMGTLHQWYTDSKTQAERELLSYGSGENGGGLEVVSLACGLVGGDTLLSYTPLSVTLLSSQVQDNEAAYQSLKFLEELDGKIPIVHVEDVCEAHIFCAENPSINGRFLVASSYASSAEIANYYLQAYPEFNLNHKYLEGPKRDIKWASRKLTDNGFVYKNDLKMILDDCIRCARRMGDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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