Glyma19g44350 - SoyBase

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Report for Sequence Feature Glyma19g44350

Feature Type:	gene_model
Chromosome:	Gm19
Start:	49809604
stop:	49811330
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g44350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01070	AT	Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein \| chr4:461858-463300 REVERSE LENGTH=480	SoyBase	E_val: 0	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0006805	GO-bp	Annotation by Michelle Graham. GO Biological Process: xenobiotic metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009636	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to toxin	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009805	GO-bp	Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0042178	GO-bp	Annotation by Michelle Graham. GO Biological Process: xenobiotic catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008194	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0035251	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity	SoyBase	N/A	ISS
KOG1192	KOG	UDP-glucuronosyl and UDP-glucosyl transferase	JGI		ISS
PTHR11926	Panther	GLUCOSYL/GLUCURONOSYL TRANSFERASES	JGI		ISS
PTHR11926:SF15	Panther	UDP-GLUCURONOSYLTRANSFERASE RELATED	JGI		ISS
PF00201	PFAM	UDP-glucoronosyl and UDP-glucosyl transferase	JGI		ISS
UniRef100_A5I866	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucosyltransferase n=1 Tax=Glycine max RepID=A5I866_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1NCJ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NCJ3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g44350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g44350

Paralog	Evidence	Comments
Glyma03g41730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g44350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g254500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g44350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g44350

Limit To All Plant Sequences

>Glyma19g44350.1   sequence type=CDS   gene model=Glyma19g44350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGAAGCTCCTCCAGTGCCACCTGCACCGCCCATAGTGGCCATGCTGCCATCCCCTGGCATGGGCCACCTAATCCCAATGATCGAGTTCGCCAAGCGAGCGGTGCGCTACCATAACCTGGCCGTCACCTTCGTCATCCCCACTGACGGCCCACCTTCTAAAGCCCAAAAGGCCGTCTTCCAGGCCCTCCCGGACTCCATTTCCCACACCTTCCTCCCTCCGGTCAATCTCTCCGACTTTCCACCGGGCACCAAAATTGAAACCCTGATCTCCCACACCGTCCTCCTCTCCCTCCCTTCCCTCCGCCAAGCCTTCCACTCCCTCTCCTCCACATACACCCTCGCCGCCGTCGTCGTCGACCTCTTCGCCACCGACGCCTTCGACGTCGCCGCCGAATTCAATGCCTCCCCCTACGTCTTCTACCCCTCCACAGCCACCGTCCTCTCCATCGCCCTCCACCTCCCCACCCTCGACAAGCAGGTCCAGTGCGAGTTCCGAGACCTCCCGGAACCGGTCACCATCCCCGGTTGCATTCCTCTTCCCGTCAAGGACTTTCTAGACCCGGTTCTGGAGCGCACCAACGAGGCCTACAAGTGGGTCCTACACCACTCCAAGCGCTACCGAGAAGCCGAGGGAATCATCGAGAACAGCTTCGCCGAACTCGAACCGGGCGCCTGGAACGAGCTGCAGAGGGAACAACCGGGACGGCCTCCGGTTTATGCGGTCGGGCCGCTTGTGAGAATGGAACCCGGTCCCGCCGACTCCGAGTGCTTGAGGTGGTTGGACGAGCAGCCACGTGGCAGCGTGTTGTTTGTTTCCTTCGGAAGCGGTGGGACCCTCTCCAGCGCCCAGATCAACGAACTGGCTCTCGGGTTGGAAAATAGCCAGCAACGGTTCTTGTGGGTGGTGAAGAGCCCAAACGATGCAATAGCCAACGCGACTTACTTCAACGCGGAGAGCCACGAGGATCCCTTGCAGTTCTTACCAGAAGGGTTCGTGGAGAGAACAAAAGGAAGGGGCTTTTTGGTTAAGTCATGGGCTCCGCAGCCACAGGTTCTGGCCCATCAATCAACGGGAGGATTCTTGAGCCATTGCGGCTGGAACTCTATACTGGAGAGCGTGGTGAACGGCGTGCCTTTAATAGCCTGGCCTCTGTTCGCGGAGCAGAGGACCAACGCGTTTATGCTCATGCATGAAGTCAAGGTGGCGCTGAGGCCCAAAGTTGCCGAGGACACTGGACTTGTCCAGAGCCAGGAAATAGCCAGCGTTGTCAAGTGCCTCATGGAAGGCCATGAAGGGAAGAAGCTTCGTTACCGAATCAAGGATCTCAAGGAGGCTGCGGCTAAGGCTCTCTCTCCAAATGGTTCCTCCACCGACCATATCTCCAATTTGGTTCTCAAGTGGACCAACAAAACCACCATCTCTACTAGTGGCTAG

Predicted protein sequences of Glyma19g44350

Limit To All Plant Sequences

>Glyma19g44350.1   sequence type=predicted peptide   gene model=Glyma19g44350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEAPPVPPAPPIVAMLPSPGMGHLIPMIEFAKRAVRYHNLAVTFVIPTDGPPSKAQKAVFQALPDSISHTFLPPVNLSDFPPGTKIETLISHTVLLSLPSLRQAFHSLSSTYTLAAVVVDLFATDAFDVAAEFNASPYVFYPSTATVLSIALHLPTLDKQVQCEFRDLPEPVTIPGCIPLPVKDFLDPVLERTNEAYKWVLHHSKRYREAEGIIENSFAELEPGAWNELQREQPGRPPVYAVGPLVRMEPGPADSECLRWLDEQPRGSVLFVSFGSGGTLSSAQINELALGLENSQQRFLWVVKSPNDAIANATYFNAESHEDPLQFLPEGFVERTKGRGFLVKSWAPQPQVLAHQSTGGFLSHCGWNSILESVVNGVPLIAWPLFAEQRTNAFMLMHEVKVALRPKVAEDTGLVQSQEIASVVKCLMEGHEGKKLRYRIKDLKEAAAKALSPNGSSTDHISNLVLKWTNKTTISTSG*

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