Glyma19g44340 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g44340

Feature Type:	gene_model
Chromosome:	Gm19
Start:	49799312
stop:	49803028
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g44340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G01430	AT	Annotation by Michelle Graham. TAIR10: TRICHOME BIREFRINGENCE-LIKE 25 \| chr1:156953-158536 REVERSE LENGTH=456	SoyBase	E_val: 1.00E-177	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
PTHR13533	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13533:SF3	Panther	gb def: unknown protein [takifugu rubripes]	JGI		ISS
PF03005	PFAM	Arabidopsis proteins of unknown function	JGI		ISS
UniRef100_I1NCJ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCJ2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q84JH9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein trichome birefringence-like 25 n=1 Tax=Arabidopsis thaliana RepID=Q84JH9_ARATH	SoyBase	E_val: 6.00E-175	ISS

Expression Patterns of Glyma19g44340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g44340

Paralog	Evidence	Comments
Glyma03g41720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g44340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g254300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g44340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g44340

Limit To All Plant Sequences

>Glyma19g44340.1   sequence type=CDS   gene model=Glyma19g44340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAGGAAACCAAGTCTGATTTGAATCCATTGTTCGCGCAGAAGCACAGCCATCATCATGTTCATGTGTTCCTTAAGTTGGCAGTGTCGTGTCTCTTGGTGGGTCTCGCCATTCGCCTCCTCTTCTTCACCGATTCATTCAGCTTGTCATCTGTGGTGCATAATCCTCCTCCTCTTGCAGCTAACGCAATAGTACAGTTACCCATTCTTTCTTTTCCCTCTCCGCCCCCTCCTTCTCCTTCTCTTCATTTTCCGCCAAACCAGACCCAAACCTCTCCCCGAGATGCAGAGAAGTGTGATCTTTTTGTGGGAGATTGGGTGCCGGACCCAAATGGTCCAATGTACACTAATGAGAGCTGCCGTGTGATTGAAGATCATCAAAACTGCATGAGGAATGGACGTCCTGATTCGGGGTACCTTTATTGGAGGTGGAACCCAAGGGGTTGTCAATTACCCAAGTTCAGTCCAAAGAAATTCCTTGACATGATGAGGGATAAATCATGGGCCTTTATTGGTGATTCCATCTCTCGCAACCATGTGCAATCTTTACTTTGCATTCTTTCCCAGGTGGAAGCAGCTGATGAGGTGTACCATGATGAGGAATATAGATCAAAGATATGGAAGTTCCCTTCCCACAACTTCACACTCTCAGTGATATGGGCTCCTTTCCTTATCAAAGCAGATATCTTTGAGGACATGAATGGAGTTTCCTCTTCAGAAATACAGCTTTATCTGGACACTCTGGACGACAAATGGACCAACCAATACAAGAATTTTGACTATGTTGTAATCGCAGGTGGCAAATGGTTTCTCAAGACAGCAATATACCATGAAAACAACACTTTAACAGGCTGCCACAACTGCCATGGAAAGAATTTAACCGAGGTGGGATTCGAACACGCGTACCGCAAAGCATTGCAGCAGGTTTTTGACTTCATGACACACTCAGAACACAAAGCGGTTGTCTTCTTCAGAACCACCACACCAGACCACTTTGAGAATGGGGAATGGTTCAGCGGAGGGTACTGCAATAGGACAGTGCCCTTCAAAGAGGACCAGGTTGAAGTGAGTTATGTTGATTCCATCATCAGAGGCATTGAACTTGAAGAGTTTCACAAGACTAAGAATTCAAGTGCCAACAACTTGAAACTTTTGGACACAACTGGGCTCTCACTGTTGAGGCCCGATGGGCATCCAGGTCCATATCGCCAGTTCCATCCAAAGCCCAATGCGAAGAAGGTCCAGAATGATTGCCTGCACTGGTGTCTGCCAGGCCCAATTGATTCCTGGAACGACATAGTTTTGCAAATGCTGACAATGTGA

Predicted protein sequences of Glyma19g44340

Limit To All Plant Sequences

>Glyma19g44340.1   sequence type=predicted peptide   gene model=Glyma19g44340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKETKSDLNPLFAQKHSHHHVHVFLKLAVSCLLVGLAIRLLFFTDSFSLSSVVHNPPPLAANAIVQLPILSFPSPPPPSPSLHFPPNQTQTSPRDAEKCDLFVGDWVPDPNGPMYTNESCRVIEDHQNCMRNGRPDSGYLYWRWNPRGCQLPKFSPKKFLDMMRDKSWAFIGDSISRNHVQSLLCILSQVEAADEVYHDEEYRSKIWKFPSHNFTLSVIWAPFLIKADIFEDMNGVSSSEIQLYLDTLDDKWTNQYKNFDYVVIAGGKWFLKTAIYHENNTLTGCHNCHGKNLTEVGFEHAYRKALQQVFDFMTHSEHKAVVFFRTTTPDHFENGEWFSGGYCNRTVPFKEDQVEVSYVDSIIRGIELEEFHKTKNSSANNLKLLDTTGLSLLRPDGHPGPYRQFHPKPNAKKVQNDCLHWCLPGPIDSWNDIVLQMLTM*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain