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Report for Sequence Feature Glyma19g44310

Feature Type:gene_model
Chromosome:Gm19
Start:49775282
stop:49780336
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g44310
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46370AT Annotation by Michelle Graham. TAIR10: Auxin-responsive GH3 family protein | chr2:19034342-19036369 FORWARD LENGTH=575 SoyBaseE_val: 0ISS
GO:0009585GO-bp Annotation by Michelle Graham. GO Biological Process: red, far-red light phototransduction SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009694GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009861GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid and ethylene-dependent systemic resistance SoyBaseN/AISS
GO:0009864GO-bp Annotation by Michelle Graham. GO Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010046GO-bp Annotation by Michelle Graham. GO Biological Process: response to mycotoxin SoyBaseN/AISS
GO:0010119GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement SoyBaseN/AISS
GO:0010193GO-bp Annotation by Michelle Graham. GO Biological Process: response to ozone SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0071365GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to auxin stimulus SoyBaseN/AISS
GO:2000030GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of response to red or far red light SoyBaseN/AISS
GO:2000377GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of reactive oxygen species metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0019899GO-mf Annotation by Michelle Graham. GO Molecular Function: enzyme binding SoyBaseN/AISS
GO:0070566GO-mf Annotation by Michelle Graham. GO Molecular Function: adenylyltransferase activity SoyBaseN/AISS
GO:0080123GO-mf Annotation by Michelle Graham. GO Molecular Function: jasmonate-amino synthetase activity SoyBaseN/AISS
PF03321PFAM GH3 auxin-responsive promoter JGI ISS
UniRef100_G7L419UniRef Annotation by Michelle Graham. Most informative UniRef hit: GH3 family protein n=1 Tax=Medicago truncatula RepID=G7L419_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1NCI9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NCI9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g44310
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g44310
ParalogEvidenceComments
Glyma03g41700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g44310 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g254000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g44310
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g44310
>Glyma19g44310.1   sequence type=CDS   gene model=Glyma19g44310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGAGAAAGTGGGGGAGTTTAACATGGATAAAGTTATACAAGAGTTTGAATTATTGACACGGGATGCAGAAAGGGTTCAGAGGGAAACACTGAAGAGGATTTTGGAGGATAACGCATCAGCAGAGTACTTGCAGAGTTTGGGTCTCAATGGAAGAACTGACCCTGAGAGTTTCAAGGCCTGTGTTCCACTGGTCACCCACAAAGAATTGGAACCTTATATCTACAGAATTATTGATGGTGATGCTTCTCCTATTCTCACTGGAAAACCCATCACAACCATGTCATTAAGTTCTGGCACTACCCAGGGGAAGCCAAAATATGTACCTTGGAATGATGAATTGTATGAAACCACAATGCAGATATACCTGACCTCTTTTGTCTTTAGAAACAGGGAGTTTCCTATAAAAAATGGGAAGGCTTTAAGCTTTATATACGGTAGCAAACAGTTGAAAACAAAGGGGGGTCTGGCGGCTAGAACTGCCACAAGCAACGTGTTCTGTAGTGCTGGTTACAAGTGTGCAATGAGGGCACTCCAATCCCAATGCTGCAGCCCGGATGAAGTGATATTTGGTCCTGATTTTTTCCAATCACTGTACTGCCATCTGTTGTGTGGTCTGATTTTCCGGGAGGAAGTTCAGTTTGTGTCTTCCACATTTGCACATAGCATTGTCCATGCTTTTAGAACCTTTGAACAAGTGTGGGAAGAGCTGTGTAACGATATCAGAGAAGGGGTTCTCACCAGAAATGTCACCATTCCTTCCATTCGAATGGCCATGTCTAAACTGCTCAAACCAAACCCTGAATTAGCCAACACGATCCACCAAAAATGCAGGGGATTGAGCAACTGGTACGGGTTAATACCAGAGCTTTTTCCTAATGCAAAGTATATTTATGGCATCATGACTGGGTCGATGGAGCCTTATTTGAAAAAAATGAGGCATTATGCTGGGGAGCTGCCTTTGTTGACTGCTGACTACGGATCTTCTGAGGGATGGATAGCAGCTAATGTGAACCCACAACTTCCTCCTGAGTATGCCACTTATGCTGTGCTTCCTCACATTGGTTACTTTGAATTCATTCCTCTCTCAGAGTTTGAGAACACCAAGGGTGAACCTGATTTCCTCTGTGTTGATCCTAAGCCCATGGGCCTGACTGAAGTCAAGGTTGGTGAAGAGTATGAAATTGTTATGACGAATCCAGCAGGTTTATACCGGTATAGATTAGGGGATGTGGTGAAGGTTATGGGATTCCACAATTCAACTCCAGAACTCAAGTTTATTCGAAGGAGCAGTCTTCTGCTCAACATTAACATCGACAAGAACACTGAGAAGGATTTACAATTAGCCGTGGAAGCTGCAGGGAAGTTGCTAGCAGAGGAGAAACTGGAAGTAGTTGACTTCAGTAGCCAGGTTGATTTATCCAAAGAACCAGGGCACTATGTCATCTTCTGGGAAATCAGCGGAGAAGCGAGCCAAGAACTACTCCTCGAATGCTGTAACTGTTTGGACAAGTCTTTCGTTGATGCAGGCTACACCAGTTCGCGCAAAGTGAACTGCATTGGTGCCCTCGAACTACGACTTGTTCGGAGAGGAACATTCCAGAAGATTCTTGATCATTACCTAGGACTAGGAACCGCTGTTAGTCAATACAAGACACCAAGATGTGTTGGTCCTACAAACACCAGAGTTTTGCAAATCTTGAGTGAAAATGTTGTGAACAACTATCTCAGTACCGCTTTCAATTGA
Predicted protein sequences of Glyma19g44310
>Glyma19g44310.1   sequence type=predicted peptide   gene model=Glyma19g44310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEKVGEFNMDKVIQEFELLTRDAERVQRETLKRILEDNASAEYLQSLGLNGRTDPESFKACVPLVTHKELEPYIYRIIDGDASPILTGKPITTMSLSSGTTQGKPKYVPWNDELYETTMQIYLTSFVFRNREFPIKNGKALSFIYGSKQLKTKGGLAARTATSNVFCSAGYKCAMRALQSQCCSPDEVIFGPDFFQSLYCHLLCGLIFREEVQFVSSTFAHSIVHAFRTFEQVWEELCNDIREGVLTRNVTIPSIRMAMSKLLKPNPELANTIHQKCRGLSNWYGLIPELFPNAKYIYGIMTGSMEPYLKKMRHYAGELPLLTADYGSSEGWIAANVNPQLPPEYATYAVLPHIGYFEFIPLSEFENTKGEPDFLCVDPKPMGLTEVKVGEEYEIVMTNPAGLYRYRLGDVVKVMGFHNSTPELKFIRRSSLLLNINIDKNTEKDLQLAVEAAGKLLAEEKLEVVDFSSQVDLSKEPGHYVIFWEISGEASQELLLECCNCLDKSFVDAGYTSSRKVNCIGALELRLVRRGTFQKILDHYLGLGTAVSQYKTPRCVGPTNTRVLQILSENVVNNYLSTAFN*






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