Glyma19g44280 - SoyBase

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Report for Sequence Feature Glyma19g44280

Feature Type:	gene_model
Chromosome:	Gm19
Start:	49749742
stop:	49754627
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g44280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G41760	AT	Annotation by Michelle Graham. TAIR10: Nucleotide-sugar transporter family protein \| chr5:16706978-16709204 FORWARD LENGTH=340	SoyBase	E_val: 0	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0015739	GO-bp	Annotation by Michelle Graham. GO Biological Process: sialic acid transport	SoyBase	N/A	ISS
GO:0015780	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0000139	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005338	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide-sugar transmembrane transporter activity	SoyBase	N/A	ISS
GO:0005351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0005456	GO-mf	Annotation by Michelle Graham. GO Molecular Function: CMP-N-acetylneuraminate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015136	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sialic acid transmembrane transporter activity	SoyBase	N/A	ISS
KOG2234	KOG	Predicted UDP-galactose transporter	JGI		ISS
PTHR10231	Panther	SUGAR TRANSPORTER	JGI		ISS
PTHR10231:SF6	Panther	CMP-SIALIC ACID TRANSPORTER-RELATED	JGI		ISS
PF04142	PFAM	Nucleotide-sugar transporter	JGI		ISS
UniRef100_G7L417	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-galactose/UDP-N-acetylglucosamine transporter srf-3 n=1 Tax=Medicago truncatula RepID=G7L417_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NCI6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCI6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g44280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g44280 not represented in the dataset	Glyma19g44280 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g44280

Paralog	Evidence	Comments
Glyma03g41680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g44280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g253600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g44280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g44280

Limit To All Plant Sequences

>Glyma19g44280.4   sequence type=transcript   gene model=Glyma19g44280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTGAAGTAATGATATGATTAATAATTTTTTGGTCTTAAATAACGGGGACACGCGCCAAAGCCTTTTATAGCACATGGGAGTTGGTACTAAACGGTGCGTTTGAGCGCGTGTTTCTTGAGCCTCTCTGCTTGGATCTGCAGAAGTTGAAGAAGAAGAGAAGAAGAAGATGCAGTGGTACTTCGTCGCTTCGCTCCTCACCGTCCTCACCAGTTCTCAGGGAATACTAACAACCCTCTCGCAAAGTAACGGAGAGTACAAGTATGATTACGCCACGGTCCCATTTCTCGCCGAGGTTTTCAAGCTTGCGGTGTCAAGTTTGTTACTGTGGAGGGAATGCAAAAAGTCACCTTTGCCAAAGATGACAACGGAGTGGAAAACGGTGTCTCTGTTCCCCATTCCCTCAGTTATATATCTGATCCACAACAATGTTCAGTTTGCTACACTCACTTATGTGGACACATCCACTTATCAGATAATGGGCAATTTGAAGATTGTCACCACTGGAATTCTATTTAGGTTGTTCTTAGGGAGGAGGCTTTCTAACTTGCAGTGGATGGCTATTGTGCTGTTGGCTGTTGGGACAACCACAAGTCAGGTTAGGGGATGTGGAGAGGCTTCTTGTGACTCCCTTTTCTCAGCTCCAATTCAGGGCTACATGTTAGGAGTTCTATCTGCTTGTCTCTCAGCTTTAGCTGGGATTTATACTGAGTTCTTGATGAAGAAAAACAATGACAGCTTATACTGGCAGAATATACAGTTGTACACGTTTGGTACACTTTTCAATATGGCACGACTACTTGCAGATGATTTTAGAGGTGGATTTGAAAATGGACCCTGGTGGCAACGTATTTTCAATGGATACACTATCACTACCTGGATGGTGGTATTGAATCTAGGGTCTACTGGTCTTTTGGTTTCATGGTTAATGAAACATGCTGATAATATTGTAAAGGTCTATTCCACATCAATGGCGATGCTGCTGACGATGATACTTTCACTATTTCTCTTCAACTTCAAACCTACACTGCAGCTTTTCTTGGGCATTATTATTTGTATGATGTCTCTACACATGTATTTTGCCCCACCAAAATATGCTCTTAGATATGCCATAAACAGTTAAGCCAGATGAAGAGAAGCTCATTGAAGTTTCTGTTGATCGAAGAACACTTTCATGATGTTGTATTGACATCTGAATACAATGCTTGGGTAGCAGAAATGCTGAATATTATTCCATGCTGCTGCATTGATTCAGTGACTTTGTAGGCATCGTTAGGGGGATGACTTCAACTCTATATAGCTAATTTGAACATCCCATGTGTTGCCTGCGTTTAAATATATGGAAAGGGTATACTGTGGGAAAAGTCTGTTGAATGAAAGTGAGCAGAATGTGGTTTAGAAGGAAATAGAATTTTCAATTTTGCCATTGGTTTTTGGTAAGTCTTCATAGGGGTGTTACCCATTGACACACAAGGCACTTTATGTCTTCCTCGAATGTGATCTTTCTACCTGGTTGCTGTACAAACTAAACAATTCTTCACCATTAATTATTTTAAAGGTTAAATTAGTTTTTTAATTTAATTTTTACGTTTGATTTGGT

Coding sequences of Glyma19g44280

Limit To All Plant Sequences

>Glyma19g44280.3   sequence type=CDS   gene model=Glyma19g44280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGTGGTACTTCGTCGCTTCGCTCCTCACCGTCCTCACCAGTTCTCAGGGAATACTAACAACCCTCTCGCAAAGTAACGGAGAGTACAAGTATGATTACGCCACGGTCCCATTTCTCGCCGAGGTTTTCAAGCTTGCGGTGTCAAGTTTGTTACTGTGGAGGGAATGCAAAAAGTCACCTTTGCCAAAGATGACAACGGAGTGGAAAACGGTGTCTCTGTTCCCCATTCCCTCAGTTATATATCTGATCCACAACAATGTTCAGTTTGCTACACTCACTTATGTGGACACATCCACTTATCAGATAATGGGCAATTTGAAGATTGTCACCACTGGAATTCTATTTAGGTTGTTCTTAGGGAGGAGGCTTTCTAACTTGCAGTGGATGGCTATTGTGCTGTTGGCTGTTGGGACAACCACAAGTCAGGTTAGGGGATGTGGAGAGGCTTCTTGTGACTCCCTTTTCTCAGCTCCAATTCAGGGCTACATGTTAGGAGTTCTATCTGCTTGTCTCTCAGCTTTAGCTGGGATTTATACTGAGTTCTTGATGAAGAAAAACAATGACAGCTTATACTGGCAGAATATACAGTTGTACACGTTTGGTACACTTTTCAATATGGCACGACTACTTGCAGATGATTTTAGAGGTGGATTTGAAAATGGACCCTGGTGGCAACGTATTTTCAATGGATACACTATCACTACCTGGATGGTGGTATTGAATCTAGGGTCTACTGGTCTTTTGGTTTCATGGTTAATGAAACATGCTGATAATATTGTAAAGGTCTATTCCACATCAATGGCGATGCTGCTGACGATGATACTTTCACTATTTCTCTTCAACTTCAAACCTACACTGCAGCTTTTCTTGGGCATTATTATTTGTATGATGTCTCTACACATGTATTTTGCCCCACCAAAATATGCTCTTAGATATGCCATAAACAGTTAA

>Glyma19g44280.4   sequence type=CDS   gene model=Glyma19g44280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGTGGTACTTCGTCGCTTCGCTCCTCACCGTCCTCACCAGTTCTCAGGGAATACTAACAACCCTCTCGCAAAGTAACGGAGAGTACAAGTATGATTACGCCACGGTCCCATTTCTCGCCGAGGTTTTCAAGCTTGCGGTGTCAAGTTTGTTACTGTGGAGGGAATGCAAAAAGTCACCTTTGCCAAAGATGACAACGGAGTGGAAAACGGTGTCTCTGTTCCCCATTCCCTCAGTTATATATCTGATCCACAACAATGTTCAGTTTGCTACACTCACTTATGTGGACACATCCACTTATCAGATAATGGGCAATTTGAAGATTGTCACCACTGGAATTCTATTTAGGTTGTTCTTAGGGAGGAGGCTTTCTAACTTGCAGTGGATGGCTATTGTGCTGTTGGCTGTTGGGACAACCACAAGTCAGGTTAGGGGATGTGGAGAGGCTTCTTGTGACTCCCTTTTCTCAGCTCCAATTCAGGGCTACATGTTAGGAGTTCTATCTGCTTGTCTCTCAGCTTTAGCTGGGATTTATACTGAGTTCTTGATGAAGAAAAACAATGACAGCTTATACTGGCAGAATATACAGTTGTACACGTTTGGTACACTTTTCAATATGGCACGACTACTTGCAGATGATTTTAGAGGTGGATTTGAAAATGGACCCTGGTGGCAACGTATTTTCAATGGATACACTATCACTACCTGGATGGTGGTATTGAATCTAGGGTCTACTGGTCTTTTGGTTTCATGGTTAATGAAACATGCTGATAATATTGTAAAGGTCTATTCCACATCAATGGCGATGCTGCTGACGATGATACTTTCACTATTTCTCTTCAACTTCAAACCTACACTGCAGCTTTTCTTGGGCATTATTATTTGTATGATGTCTCTACACATGTATTTTGCCCCACCAAAATATGCTCTTAGATATGCCATAAACAGTTAA

Predicted protein sequences of Glyma19g44280

Limit To All Plant Sequences

>Glyma19g44280.3   sequence type=predicted peptide   gene model=Glyma19g44280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQWYFVASLLTVLTSSQGILTTLSQSNGEYKYDYATVPFLAEVFKLAVSSLLLWRECKKSPLPKMTTEWKTVSLFPIPSVIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFRLFLGRRLSNLQWMAIVLLAVGTTTSQVRGCGEASCDSLFSAPIQGYMLGVLSACLSALAGIYTEFLMKKNNDSLYWQNIQLYTFGTLFNMARLLADDFRGGFENGPWWQRIFNGYTITTWMVVLNLGSTGLLVSWLMKHADNIVKVYSTSMAMLLTMILSLFLFNFKPTLQLFLGIIICMMSLHMYFAPPKYALRYAINS*

>Glyma19g44280.4   sequence type=predicted peptide   gene model=Glyma19g44280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQWYFVASLLTVLTSSQGILTTLSQSNGEYKYDYATVPFLAEVFKLAVSSLLLWRECKKSPLPKMTTEWKTVSLFPIPSVIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFRLFLGRRLSNLQWMAIVLLAVGTTTSQVRGCGEASCDSLFSAPIQGYMLGVLSACLSALAGIYTEFLMKKNNDSLYWQNIQLYTFGTLFNMARLLADDFRGGFENGPWWQRIFNGYTITTWMVVLNLGSTGLLVSWLMKHADNIVKVYSTSMAMLLTMILSLFLFNFKPTLQLFLGIIICMMSLHMYFAPPKYALRYAINS*

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