Glyma19g44260 - SoyBase

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Report for Sequence Feature Glyma19g44260

Feature Type:	gene_model
Chromosome:	Gm19
Start:	49735727
stop:	49742965
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g44260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G61650	AT	Annotation by Michelle Graham. TAIR10: gamma-tubulin \| chr3:22812601-22815011 REVERSE LENGTH=474	SoyBase	E_val: 0	ISS
GO:0000910	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis	SoyBase	N/A	ISS
GO:0000914	GO-bp	Annotation by Michelle Graham. GO Biological Process: phragmoplast assembly	SoyBase	N/A	ISS
GO:0006184	GO-bp	Annotation by Michelle Graham. GO Biological Process: GTP catabolic process	SoyBase	N/A	ISS
GO:0007017	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based process	SoyBase	N/A	ISS
GO:0007020	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule nucleation	SoyBase	N/A	ISS
GO:0009553	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac development	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0046785	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule polymerization	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0048768	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell tip growth	SoyBase	N/A	ISS
GO:0051258	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein polymerization	SoyBase	N/A	ISS
GO:0051641	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular localization	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005874	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: microtubule	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG1374	KOG	Gamma tubulin	JGI		ISS
PTHR11588	Panther	TUBULIN	JGI		ISS
PTHR11588:SF7	Panther	TUBULIN BETA CHAIN	JGI		ISS
PF00091	PFAM	Tubulin/FtsZ family, GTPase domain	JGI		ISS
PF03953	PFAM	Tubulin C-terminal domain	JGI		ISS
UniRef100_G7L416	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tubulin gamma-1 chain protein n=1 Tax=Medicago truncatula RepID=G7L416_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NCI3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCI3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g44260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g44260 not represented in the dataset	Glyma19g44260 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g44260

Paralog	Evidence	Comments
Glyma03g41670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g44260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g253300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g44260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g44260

Limit To All Plant Sequences

>Glyma19g44260.4   sequence type=transcript   gene model=Glyma19g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTGCCAGACATTTTTATATTTATTTTTTTAGTAAGTTGTATTTTTTAAAATTTTTTTTAGTCCATATTACTATTTGCTGTGTAGAAAGGAGAAATATCAAGCTTTGAAAACATAAAGACCAATTTAAGAGTAAGCACGAGAAGAAAATAGAAATCTAAAGATCACAACGAGTTCCTATTACATGCGAAATATCCGAAACAGCAAAAAGACTAGTTTTGAATATCCGAAGCAGAGTAAATAAGAAGTTATTTAGTGAGTGTTGTGTTGTCGAGTGAATAAAGGAACGAACTAAGGCATCGTTTTCATTTTTGTTTTTTGTTTTTTGTTTTTTGAAAAAGGGTCTTCCCCGCCACCAAACCCTAGCTAGCGCTGGAAAAATGCCGAGGGAAATCATCACTCTCCAGGTTGGCCAATGTGGGAATCAGATCGGCATGGAGTTCTGGAAGCAGCTCTGCCTCGAACACGGCATCAGCAAAGAAGGCATCCTCGAAGACTTCGCCACTCAGGGGGGTGACCGTAAAGACGTGTTCTTCTACCAAGCTGATGACCAGCATTATATACCACGGGCTCTCCTGATTGACTTGGAGCCAAGAGTGATTAATGGAATTCAAAATAGTGACTACCGAAATCTCTACAATCATGAGAACATCTTTGTCTCAGATCACGGAGGTGGTGCTGGAAACAATTGGGCCAGTGGATACGATCAGGGACAACATGTTGAAGAAGAAATAATGGACATGATTGACAGAGAAGCAGATGGCAGTGACAGTCTTGAGGGTTTTGTTCTATGTCATTCAATTGCAGGAGGAACAGGCTCAGGTATGGGCTCATACTTGTTGGAGACTCTGAATGACCGCTACAGCAAAAAACTGGTTCAGACATACAGTGTGTTTCCTAACCAAATGGAGACTAGTGATGTGGTGGTCCAACCATACAATTCACTTTTAACACTCAAGAGATTGACACTTAATGCAGATTGTGTTGTAGTTCTTGACAATACTGCACTAAATAGAATTGCTGTGGAACGGCTTCATTTATCAAATCCATCATTTGCTCAAACAAATTCCTTAGTTTCTACAGTTATGTCTGCCAGCACAACAACTCTTCGTTATCCAGGGTACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTTTGATTCCAACACCAAGATGCCATTTTCTAATGACAGGCTATACACCTTTGACTGTGGAACGCCAGGCTAATTTAATTCGTAAGACTACTGTACTTGATGTTATGAGAAGACTTCTGCAGGCAAAGAATATTATGGTCTCTTCTTATGCTCGGACAAAAGATGCTAGCCAAGCAAAATATATATCAATTCTGAATATCATCCAAGGAGAGGTTGATCCAACTCAGGTTCATGAAAGTTTGCAGAGGATTCGTGAAAGAAAACTAGTTAACTTTATTGAGTGGGGTCCTGCAAGTATTCAGGTTGCTCTATCAAGGAAGTCTCCTTATGTTCAAACTGCACATAGGGTCAGTGGCCTTATGCTGGCAAGTCATACTAGCATCCGTCACCTTTTCAGTAAAACATTGAGCCAGTATGAGAAGTTGAGAAAGAAACAAGCCTTTATAGACGCCTACAGGAAGTTTCCTATGTTTGCTGATAATGACCTCTCAGAATTTGATGAATCAAGGGACATAATTGAGACTTTGGTTGATGAATACAAGGCCTGTGAGTCCCCAGATTATATCAAATGGGGAATGGAGGATCCAAACAACATGCTAACAGGAGAAGGCAATGCTACAGGATCATTGGATCCAAATTCAGTAGCGTGAAAAAACCAAGTACCACAAGGAAAGCATAAAAAAGGAAAGGGTTTTTCTGAAAGATCAACAAGGTTTCTTTTGAAGTTTTTAACTTTTTTGGGGTGTGAGATGGTTTGCGGTGTGATTAGTTTTGTTTGTATTTGTTTGCTAATCGTTTGTGCCCAAGGGAAGGGAGATTGAGTACAGAATCTTTCTGTATTGATTCGTTTTTAGCAATGTATATGGTTGGTTGGTCATTGAAATGTAGAGAATTAGGCAAACCTAGTTTCTTTATCTGTGGATCTGACGTGTTTGTTAGGTGATATTGCTGTTTGGCATGAATTGAAATTGAAATATTTAAATTTAAATTGATGTGGGCATAGATTTACACGATTCATGTGGTGCAGAGACTCACCTCTTATACATGTCTTGAAGGGTTTTAAGGGTTTTGAAGATTAACAATTATAG

Coding sequences of Glyma19g44260

Limit To All Plant Sequences

>Glyma19g44260.3   sequence type=CDS   gene model=Glyma19g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGAGGGAAATCATCACTCTCCAGGTTGGCCAATGTGGGAATCAGATCGGCATGGAGTTCTGGAAGCAGCTCTGCCTCGAACACGGCATCAGCAAAGAAGGCATCCTCGAAGACTTCGCCACTCAGGGGGGTGACCGTAAAGACGTGTTCTTCTACCAAGCTGATGACCAGCATTATATACCACGGGCTCTCCTGATTGACTTGGAGCCAAGAGTGATTAATGGAATTCAAAATAGTGACTACCGAAATCTCTACAATCATGAGAACATCTTTGTCTCAGATCACGGAGGTGGTGCTGGAAACAATTGGGCCAGTGGATACGATCAGGGACAACATGTTGAAGAAGAAATAATGGACATGATTGACAGAGAAGCAGATGGCAGTGACAGTCTTGAGGGTTTTGTTCTATGTCATTCAATTGCAGGAGGAACAGGCTCAGGTATGGGCTCATACTTGTTGGAGACTCTGAATGACCGCTACAGCAAAAAACTGGTTCAGACATACAGTGTGTTTCCTAACCAAATGGAGACTAGTGATGTGGTGGTCCAACCATACAATTCACTTTTAACACTCAAGAGATTGACACTTAATGCAGATTGTGTTGTAGTTCTTGACAATACTGCACTAAATAGAATTGCTGTGGAACGGCTTCATTTATCAAATCCATCATTTGCTCAAACAAATTCCTTAGTTTCTACAGTTATGTCTGCCAGCACAACAACTCTTCGTTATCCAGGGTACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTTTGATTCCAACACCAAGATGCCATTTTCTAATGACAGGCTATACACCTTTGACTGTGGAACGCCAGGCTAATTTAATTCGTAAGACTACTGTACTTGATGTTATGAGAAGACTTCTGCAGGCAAAGAATATTATGGTCTCTTCTTATGCTCGGACAAAAGATGCTAGCCAAGCAAAATATATATCAATTCTGAATATCATCCAAGGAGAGGTTGATCCAACTCAGGTTCATGAAAGTTTGCAGAGGATTCGTGAAAGAAAACTAGTTAACTTTATTGAGTGGGGTCCTGCAAGTATTCAGGTTGCTCTATCAAGGAAGTCTCCTTATGTTCAAACTGCACATAGGGTCAGTGGCCTTATGCTGGCAAGTCATACTAGCATCCGTCACCTTTTCAGTAAAACATTGAGCCAGTATGAGAAGTTGAGAAAGAAACAAGCCTTTATAGACGCCTACAGGAAGTTTCCTATGTTTGCTGATAATGACCTCTCAGAATTTGATGAATCAAGGGACATAATTGAGACTTTGGTTGATGAATACAAGGCCTGTGAGTCCCCAGATTATATCAAATGGGGAATGGAGGATCCAAACAACATGCTAACAGGAGAAGGCAATGCTACAGGATCATTGGATCCAAATTCAGTAGCGTGA

>Glyma19g44260.4   sequence type=CDS   gene model=Glyma19g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGAGGGAAATCATCACTCTCCAGGTTGGCCAATGTGGGAATCAGATCGGCATGGAGTTCTGGAAGCAGCTCTGCCTCGAACACGGCATCAGCAAAGAAGGCATCCTCGAAGACTTCGCCACTCAGGGGGGTGACCGTAAAGACGTGTTCTTCTACCAAGCTGATGACCAGCATTATATACCACGGGCTCTCCTGATTGACTTGGAGCCAAGAGTGATTAATGGAATTCAAAATAGTGACTACCGAAATCTCTACAATCATGAGAACATCTTTGTCTCAGATCACGGAGGTGGTGCTGGAAACAATTGGGCCAGTGGATACGATCAGGGACAACATGTTGAAGAAGAAATAATGGACATGATTGACAGAGAAGCAGATGGCAGTGACAGTCTTGAGGGTTTTGTTCTATGTCATTCAATTGCAGGAGGAACAGGCTCAGGTATGGGCTCATACTTGTTGGAGACTCTGAATGACCGCTACAGCAAAAAACTGGTTCAGACATACAGTGTGTTTCCTAACCAAATGGAGACTAGTGATGTGGTGGTCCAACCATACAATTCACTTTTAACACTCAAGAGATTGACACTTAATGCAGATTGTGTTGTAGTTCTTGACAATACTGCACTAAATAGAATTGCTGTGGAACGGCTTCATTTATCAAATCCATCATTTGCTCAAACAAATTCCTTAGTTTCTACAGTTATGTCTGCCAGCACAACAACTCTTCGTTATCCAGGGTACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTTTGATTCCAACACCAAGATGCCATTTTCTAATGACAGGCTATACACCTTTGACTGTGGAACGCCAGGCTAATTTAATTCGTAAGACTACTGTACTTGATGTTATGAGAAGACTTCTGCAGGCAAAGAATATTATGGTCTCTTCTTATGCTCGGACAAAAGATGCTAGCCAAGCAAAATATATATCAATTCTGAATATCATCCAAGGAGAGGTTGATCCAACTCAGGTTCATGAAAGTTTGCAGAGGATTCGTGAAAGAAAACTAGTTAACTTTATTGAGTGGGGTCCTGCAAGTATTCAGGTTGCTCTATCAAGGAAGTCTCCTTATGTTCAAACTGCACATAGGGTCAGTGGCCTTATGCTGGCAAGTCATACTAGCATCCGTCACCTTTTCAGTAAAACATTGAGCCAGTATGAGAAGTTGAGAAAGAAACAAGCCTTTATAGACGCCTACAGGAAGTTTCCTATGTTTGCTGATAATGACCTCTCAGAATTTGATGAATCAAGGGACATAATTGAGACTTTGGTTGATGAATACAAGGCCTGTGAGTCCCCAGATTATATCAAATGGGGAATGGAGGATCCAAACAACATGCTAACAGGAGAAGGCAATGCTACAGGATCATTGGATCCAAATTCAGTAGCGTGA

Predicted protein sequences of Glyma19g44260

Limit To All Plant Sequences

>Glyma19g44260.3   sequence type=predicted peptide   gene model=Glyma19g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGILEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNSDYRNLYNHENIFVSDHGGGAGNNWASGYDQGQHVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPSFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANLIRKTTVLDVMRRLLQAKNIMVSSYARTKDASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKTLSQYEKLRKKQAFIDAYRKFPMFADNDLSEFDESRDIIETLVDEYKACESPDYIKWGMEDPNNMLTGEGNATGSLDPNSVA*

>Glyma19g44260.4   sequence type=predicted peptide   gene model=Glyma19g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGILEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNSDYRNLYNHENIFVSDHGGGAGNNWASGYDQGQHVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPSFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANLIRKTTVLDVMRRLLQAKNIMVSSYARTKDASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKTLSQYEKLRKKQAFIDAYRKFPMFADNDLSEFDESRDIIETLVDEYKACESPDYIKWGMEDPNNMLTGEGNATGSLDPNSVA*

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