Glyma19g44230 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma19g44230): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma19g44230): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma19g44230

Feature Type:	gene_model
Chromosome:	Gm19
Start:	49717654
stop:	49721448
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g44230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G64230	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 28 \| chr1:23833792-23835220 FORWARD LENGTH=148	SoyBase	E_val: 1.00E-105	ISS
GO:0006301	GO-bp	Annotation by Michelle Graham. GO Biological Process: postreplication repair	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0044265	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular macromolecule catabolic process	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0417	KOG	Ubiquitin-protein ligase	JGI		ISS
KOG0419	KOG	Ubiquitin-protein ligase	JGI		ISS
PTHR24068	Panther	FAMILY NOT NAMED	JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
UniRef100_A9PEM1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Predicted protein n=5 Tax=rosids RepID=A9PEM1_POPTR	SoyBase	E_val: 2.00E-105	ISS
UniRef100_B2LUR8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin conjugating enzyme 2 n=1 Tax=Malus x domestica RepID=B2LUR8_MALDO	SoyBase	E_val: 6.00E-105	ISS

Expression Patterns of Glyma19g44230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g44230 not represented in the dataset	Glyma19g44230 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g44230

Paralog	Evidence	Comments
Glyma03g41630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g44230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g253000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g44230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g44230

Limit To All Plant Sequences

>Glyma19g44230.2   sequence type=transcript   gene model=Glyma19g44230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGTATTGTATGAGTATATTAATGTCTCTTTCCATACATAGTCATTTCTGCAAGTTGGGTTTGGTTTTCTCTTCCTCGTTCGTTTCATTTCGTTTCGTTGAAGAGCAACTTTTCTCTCTCTGTCTCTGTACAATTCTCCCTTTTCTTCCCTCGTAGATCGAAAGGGAATATTCTTCCATGGCCTCCAAGCGGATTCTGAAGGAGCTCAAGGACCTACAGAAAGACCCTCCAACCTCTTGCAGTGCCGGTCCCGTAGCAGAAGATATGTTTCATTGGCAAGCAACTATAATGGGTCCCCCTGATAGCCCTTATGCTGGGGGTGTTTTTCTAGTTACTATTCATTTTCCTCCGGATTATCCATTCAAGCCACCCAAGGTTGCATTTAGGACTAAAGTTTTCCACCCAAATATCAACAGCAATGGTAGTATTTGTCTTGATATCTTAAAGGAGCAGTGGAGCCCAGCATTGACAATATCTAAGGTTATGACTGTACTAAACTTTTTAACGCTAACTAATCTTCATTGGGCATCCCTTGTTTTGCAAAGAAATTTTTGTAATACAGCAACAAATAACAATGCATATAAGTGCTGAGGGAAATATTTCTATTAGTCAAAGAACATATAAATGACTAGTAGCTAATTCGATAAGTTAACTTTTTAGCATCATGTAGCAGAAGGTTACTAACTTATGGTTATATGATGATGAGGTATGACAAAATCCAGTGATGGATAAGTATGCGATGAAAAATATCTTGGGTCTATTTAATACTCTGGGTTGCATGCAATTCTTGTAGTATAGTAATGTTGTACCATGAAATGTTGATCGCATGCATACTTCTATTTGATCCATAATGTAGATTCCAGTGGATCACATATGCAGATACCTCTTAAAAATTGGTTTCAGTGCCATGATCTAAATTGCATGCAATTTTTGCACCTTCAAACTCCTAATTGTGGCTAGTAATATTAAAAATCACGCAAGGAACATTTCTTAATGTGTTGTTATTGGTGGGAAACTTTTTCTATGGGAAATTGGGAGGCCCCCATTGCAATGTATGGTTACTGTTTCTCTTGGAATATTGCTGTTTTTTAAATGGGTGGGAAGGGTTTCCGTTTCCTATTTCAGGTGTTGCTCTCCATTTGCTCCCTATTGACCGATCCAAACCCAGATGACCCCTTGGTGCCTGAAATTGCTCATATGTACAAGACAGACAGGTCCAAGTATGAAACAACTGCTAGGAGCTGGACTCAGAAGTATGCAATGGGCTAGCATGTTGGAATAAGGCATTGTATTATAGGATAGGACGTGATCCTTCCATTTTTAAAAGACATTAATGTATAATCTATCTTTTCATTCCCGCTGTTGACATATTGAGGATAGGTAACAGTGCGGTGCGGAGGATTTTTTAGTTTGTTTGTATGAAACTTCTCTTGTGAGTGCTGGGAATTGGGAAATACATGTAGCTGATATTCTTCTGTGTGTTCCAATTTATTTATCTTTACATACTATGCTTAGTATGCTAATTTCTAGTTCTTAGAAGTCACTTGGATTCCTTACCAATACTTATAGTAATAACGATATATTCTATTATACC

Coding sequences of Glyma19g44230

Limit To All Plant Sequences

>Glyma19g44230.1   sequence type=CDS   gene model=Glyma19g44230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCCAAGCGGATTCTGAAGGAGCTCAAGGACCTACAGAAAGACCCTCCAACCTCTTGCAGTGCCGGTCCCGTAGCAGAAGATATGTTTCATTGGCAAGCAACTATAATGGGTCCCCCTGATAGCCCTTATGCTGGGGGTGTTTTTCTAGTTACTATTCATTTTCCTCCGGATTATCCATTCAAGCCACCCAAGGTTGCATTTAGGACTAAAGTTTTCCACCCAAATATCAACAGCAATGGTAGTATTTGTCTTGATATCTTAAAGGAGCAGTGGAGCCCAGCATTGACAATATCTAAGGTGTTGCTCTCCATTTGCTCCCTATTGACCGATCCAAACCCAGATGACCCCTTGGTGCCTGAAATTGCTCATATGTACAAGACAGACAGGTCCAAGTATGAAACAACTGCTAGGAGCTGGACTCAGAAGTATGCAATGGGCTAG

>Glyma19g44230.2   sequence type=CDS   gene model=Glyma19g44230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCCAAGCGGATTCTGAAGGAGCTCAAGGACCTACAGAAAGACCCTCCAACCTCTTGCAGTGCCGGTCCCGTAGCAGAAGATATGTTTCATTGGCAAGCAACTATAATGGGTCCCCCTGATAGCCCTTATGCTGGGGGTGTTTTTCTAGTTACTATTCATTTTCCTCCGGATTATCCATTCAAGCCACCCAAGGTTGCATTTAGGACTAAAGTTTTCCACCCAAATATCAACAGCAATGGTAGTATTTGTCTTGATATCTTAAAGGAGCAGTGGAGCCCAGCATTGACAATATCTAAGGTTATGACTGTACTAAACTTTTTAACGCTAACTAATCTTCATTGGGCATCCCTTGTTTTGCAAAGAAATTTTTGTAATACAGCAACAAATAACAATGCATATAAGTGCTGA

Predicted protein sequences of Glyma19g44230

Limit To All Plant Sequences

>Glyma19g44230.1   sequence type=predicted peptide   gene model=Glyma19g44230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG*

>Glyma19g44230.2   sequence type=predicted peptide   gene model=Glyma19g44230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVMTVLNFLTLTNLHWASLVLQRNFCNTATNNNAYKC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain