SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G22720 | AT | Annotation by Michelle Graham. TAIR10: Actin-like ATPase superfamily protein | chr4:11937467-11938717 FORWARD LENGTH=353 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0030048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament-based movement | SoyBase | N/A | ISS |
| GO:0051645 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi localization | SoyBase | N/A | ISS |
| GO:0051646 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitochondrion localization | SoyBase | N/A | ISS |
| GO:0060151 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peroxisome localization | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004222 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity | SoyBase | N/A | ISS |
| KOG2708 | KOG | Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) | JGI | ISS | |
| PTHR11735 | Panther | O-SIALOGLYCOPROTEIN ENDOPEPTIDASE | JGI | ISS | |
| PF00814 | PFAM | Glycoprotease family | JGI | ISS | |
| UniRef100_B9T542 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: O-sialoglycoprotein endopeptidase, putative n=1 Tax=Ricinus communis RepID=B9T542_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MU23 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU23_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g44140 not represented in the dataset |
Glyma19g44140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g252200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g44140.1 sequence type=CDS gene model=Glyma19g44140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAGAATGATAGCCTTGGGGTTTGAGGGTTCAGCGAACAAGATTGGTGTTGGGGTAGTGACCTTAGATGGCACAATTCTTTCAAACCCACGGCACACATACATCACTCCTCCTGGCCAAGGCTTTCTTCCCAGAGAGACAGCACAGCACCACCTCCAACACGTTCTTCCCCTTATCAAATCCGCTTTGGAAACTGCACAAATCACTCCACATGACATTGACTGCCTCTGCTACACCAAGGGTCCTGGCATGGGAGCTCCTCTGCAAGTCTCTGCTATTGTTGTTCGTGTGCTTTCGCTTCTTTGGAAGAAGCCAATTGTTGCTGTCAATCACTGTGTTGCACACATTGAGATGGGAAGGATTGTTACCGGCGCTGATGACCCCGTTGTCTTGTATGTCAGTGGTGGCAACACTCAAGTCATTGCTTACAGCGAGGGGCGTTATCGAATCTTTGGAGAGACCATCGACATTGCTGTGGGGAATTGCTTGGATCGCTTTGCAAGGGTCTTGACACTTTCCAATGATCCTAGCCCCGGATATAACATTGAGCAGCTTGCGAAAAAGGGAGAGAAGTTTATCGACCTGCCTTATGTTGTCAAAGGGATGGATGTATCTTTTAGTGGGATATTGAGCTATATTGAAGCAACTGCTGCTGAAAAGCTAAAGAATAATGAGTGCACGCCTGCAGACTTGTGCTACTCTCTGCAGGAGACATTGTTTGCCATGCTTGTGGAGATAACGGAGCGGGCTATGGCTCATTGCGACACAAAAGATGTTCTTATAGTTGGTGGTGTAGGTTGCAATGAGCGGTTGCAAGAGATGATGAGGACCATGTGCTCTGAACGTGGTGGAAGATTGTTTGCTACTGATGATAGATATTGCATTGACAATGGAGCAATGATAGCTTATACTGGTCTCCTTGAATTTGCTCATGGCGCATCAACTCCACTAGAGGATTCTACATTCACCCAGCGGTTCCGGACAGATGAAGTGAAAGCAATATGGAGAGAAGCAAATCTGGCAAAATTGAATGGGCTTGCAGAGAAGAGCACTTGA
>Glyma19g44140.1 sequence type=predicted peptide gene model=Glyma19g44140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKRMIALGFEGSANKIGVGVVTLDGTILSNPRHTYITPPGQGFLPRETAQHHLQHVLPLIKSALETAQITPHDIDCLCYTKGPGMGAPLQVSAIVVRVLSLLWKKPIVAVNHCVAHIEMGRIVTGADDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDRFARVLTLSNDPSPGYNIEQLAKKGEKFIDLPYVVKGMDVSFSGILSYIEATAAEKLKNNECTPADLCYSLQETLFAMLVEITERAMAHCDTKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCIDNGAMIAYTGLLEFAHGASTPLEDSTFTQRFRTDEVKAIWREANLAKLNGLAEKST*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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