Report for Sequence Feature Glyma19g44120
Feature Type: gene_model
Chromosome: Gm19
Start: 49628018
stop: 49629411
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g44120
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G01200 AT
Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein | chr4:506783-507535 REVERSE LENGTH=250
SoyBase E_val: 1.00E-69 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF00168 PFAM
C2 domain
JGI ISS
UniRef100_E5GCH5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: C2 domain-containing protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCH5_CUCME
SoyBase E_val: 7.00E-72 ISS
UniRef100_I1NCG9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1NCG9_SOYBN
SoyBase E_val: 5.00E-173 ISS
Expression Patterns of Glyma19g44120
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g44120
Paralog Evidence Comments
Glyma03g41520 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g44120 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g252000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g44120
Coding sequences of Glyma19g44120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g44120.2 sequence type=CDS gene model=Glyma19g44120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCGTCGGCGGCGAGGACTCATCAAGTATTGGAGATCAACTTGATCTCCGCGCAGGGCCTGAAGCCGCCTTCATCTCCACGGCGGAGGCTTCAAACCTACGCCGTCACGTGGATCGACCCCGCCACCAAGCTCCGAACACGCGTCGACAAGCTCGGCGGCCACAACCCTACCTGGAACGATAAGTTCCTCTTCCGAGTTACGCCGGATTTTCTCGCCGGCGACACCTCCAGTGTCTGCGTCGCCATCTACGCTGTCGGCACCTTCCGCGACCACCTCGTCGGCACCGTACGCTTCCTCATCAGCAATATGTTCTCCCCCGACGCCGACTACGCAACGCCGTGCTTCAGCGCTTTCCAGATCCGGCGCCCGTCGGGGAGGTTCCACGGCGTCATGAATATCGGCGCCATGGTGATGGACAGCTCCGGCTTCCCCGCGCTGGAGAAGATCTCGGCGATCGGGTACCGCGACCTCATGGGAGAGAAGATACACCAGCGCCGGAGAAAGACGCCGGAGGAGAAATCGAAGGAAACGAAGGAGGAGGAAGTTCTGTCGAGCGAATCTTGGGAGAATTCTTGCACGGAGGAGGGGGAAGGGGAGTCTTCGACGGCGTCATCTTCGTCGTCGCCGAGAACGACGGCGTTGAAGGATTGGAACGGAGTGAAGGAATTGGCGGGAAATAAAGGGTTGGCAATGTCGGCTTCGGGATTCTTGTGCTGTTTGGTGACTCAAAGAAGTGTTCACCAACAACTCACTCCAACCAATCACACTGTAGAAAGGTAA
Predicted protein sequences of Glyma19g44120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g44120.2 sequence type=predicted peptide gene model=Glyma19g44120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPSAARTHQVLEINLISAQGLKPPSSPRRRLQTYAVTWIDPATKLRTRVDKLGGHNPTWNDKFLFRVTPDFLAGDTSSVCVAIYAVGTFRDHLVGTVRFLISNMFSPDADYATPCFSAFQIRRPSGRFHGVMNIGAMVMDSSGFPALEKISAIGYRDLMGEKIHQRRRKTPEEKSKETKEEEVLSSESWENSCTEEGEGESSTASSSSSPRTTALKDWNGVKELAGNKGLAMSASGFLCCLVTQRSVHQQLTPTNHTVER*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
