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Report for Sequence Feature Glyma19g44016

Feature Type:gene_model
Chromosome:Gm19
Start:49579196
stop:49581116
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g44016
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G42960AT Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr2:17868597-17870630 REVERSE LENGTH=494 SoyBaseE_val: 8.00E-62ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_G7L302UniRef Annotation by Michelle Graham. Most informative UniRef hit: Wall-associated receptor kinase-like protein n=1 Tax=Medicago truncatula RepID=G7L302_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233ECFBUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233ECFB related cluster n=1 Tax=unknown RepID=UPI000233ECFB SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g44016
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g44016 not represented in the dataset
Glyma19g44016 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g44016
ParalogEvidenceComments
Glyma03g41430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g44016 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g44016
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g44016
>Glyma19g44016.1   sequence type=CDS   gene model=Glyma19g44016   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAAATGTTTGTCCAAGAAGAAGTTTCGTAGACAGGCAAACTTGAAGGAGATCGTGGCGTGGTCTGGATTGTACTGGTTCTGCAAAAGGGAAATTGAGAATGCCATGAATTATGGCGGTGAAAAGATATGCCTTGGACGTGGGAGTACAGGGCAGGTGTATAGAGGTGTTCTGCCAAGTGGTCAACTCGTGGCCATCAAGCATTTAACAAAGAGTAACACCTCCGAGTCTTTCACTCGAGAAGTTGAAGGCCTTTCAAGGCTTCGCCATCCTAACCTGGTTTGCCTCTTTGGAAGTTGCATAGAAGGGGATGAGAGATATTTAGTCTATGAATTTTGTGCAAACGGAAATCTTGCTCAACATCTCTTAAGAAGAGATAGCCACTTGACATGGGAAACAAGAGTAAGAATTTTGAGAGATTGTTCATACGCACTCAAGTACCTCCACCATCATATAGAAGGCTGTGTTGTCCATAGAGATATAAAGCTTACGAACATTCTTTTGAATGAGAAATACCAAGCCAAACTATCAGATTTTGGACTGGCAAAGGTGATGGGGATTACAGAGAGCAAGGTTTTTACTGATGTTAGAGGAACAATAGGCTACATGGATCCAGAGTACATGAGTAATGCCAAGCTAACCTGCGCTAGCGATGTATACAGTTTTGGTATTGTTGCTCTACAAATTCTGTCAGGACAGAAAGTCATAGAATTGGATCTTGATGCCAGAGATCAACTCACTAGGAAGGCAAGAGATGTGAGCATGGGAAAGCGTCCACTGTCGGATTTTGAAGACCCGCGACTAAATGGAAAAGTTGATAAGGCAGACTTCGAAGCCATCCTTCAGATTGCAGTGTTGTGTGTTGCCAAATCAAGCAAAGGTCGTCCAACCATTGAGCTTGTTTTTGAGGAATTGGACAAGGTCTGCGGGGACACAGAAACACGGATGAAGCAAAAGAAGGATGAGAGCTCATCAACAACATCCACCCCGAGCTCCAAATCGGCTCCTCTATGA
Predicted protein sequences of Glyma19g44016
>Glyma19g44016.1   sequence type=predicted peptide   gene model=Glyma19g44016   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKCLSKKKFRRQANLKEIVAWSGLYWFCKREIENAMNYGGEKICLGRGSTGQVYRGVLPSGQLVAIKHLTKSNTSESFTREVEGLSRLRHPNLVCLFGSCIEGDERYLVYEFCANGNLAQHLLRRDSHLTWETRVRILRDCSYALKYLHHHIEGCVVHRDIKLTNILLNEKYQAKLSDFGLAKVMGITESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGKRPLSDFEDPRLNGKVDKADFEAILQIAVLCVAKSSKGRPTIELVFEELDKVCGDTETRMKQKKDESSSTTSTPSSKSAPL*






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