SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G18410 | AT | Annotation by Michelle Graham. TAIR10: transcription activators | chr5:6097456-6104783 REVERSE LENGTH=1282 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0007020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule nucleation | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0016572 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone phosphorylation | SoyBase | N/A | ISS |
| GO:0030036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0051225 | GO-bp | Annotation by Michelle Graham. GO Biological Process: spindle assembly | SoyBase | N/A | ISS |
| GO:0051258 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein polymerization | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0031209 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: SCAR complex | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG3534 | KOG | p53 inducible protein PIR121 | JGI | ISS | |
| PTHR12195 | Panther | P53 INDUCIBLE PROTEIN-RELATED | JGI | ISS | |
| PF05994 | PFAM | Cytoplasmic Fragile-X interacting family | JGI | ISS | |
| UniRef100_B7ZGK3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 121F-specific p53 inducible RNA n=1 Tax=Lotus japonicus RepID=B7ZGK3_LOTJA | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NCF6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCF6_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma19g43970 not represented in the dataset |
Glyma19g43970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g41350 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g250600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g43970.1 sequence type=CDS gene model=Glyma19g43970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGTACCCGTCGAGGAAGCCATTGCAGCTCTATCCACATTCTCGCTCGAGGATGAGCAACCAGAGGTGCAGGGACCTGGAGTGTGGGTATCAACTGAGAGAGGTGCAACAGAAAGTCCAATAGAGTATAGCGATGTTTCTGCTTACAGACTATCTCTATCAGAGGACACAAAAGCTCTCAATCAGCTGAATGCTCTTACCCAAGAGGGAAAGGAGATGGCATCAGTGCTTTACACATATCGTAGTTGTGTCAAAGCACTTCCTCAGCTACCTGATTCTATGAAGCAAAGTCAAGCTGACTTATATTTGGAAACATATCAAGTTCTGGATTTGGAAATGAGTCGTCTGCGTGAAATTCAGCGTTGGCAAGCATCTGCTTCCTCAAAATTAGCTGCTGACATGCAACGTTTTTCTAGGCCTGAACGACGCATTAATGGCCCTACAATATCTCATTTGTGGTCTATGTTGAAGTTGCTTGATGTTTTGGTGCAACTTGATCATCTTAAAAATGCTAAGGCTAGCATACCTAATGACTTTTCATGGTATAAAAGGACTTTCACACAAGTCAGTGGTCAGTGGCAAGACACTGATTCAATGAGGGAGGAATTAGATGATTTGCAGATTTTCTTGAGCACAAGATGGGCTATTTTGTTGAATTTGCATGTTGAGATGTTCCGTGTGAACAATGTAGAGGACATTCTTCAAGTTCTTATAGTCTTTGTTGTAGAGTCTTTAGAATTGGACTTTGCACTTCTCTTTCCAGAGCGCCACGTTCTTTTGCGTGTTTTGCCTGTTCTTGTTGTCCTAGTGACATCATCAGAGAAAGACAGTGAGTCTCTGTACAAGAGGGTGAAAATCAACAGACTGATCAATATATTTAAGAATGAAGCAGTCATTCCTGCATTTCCAGATCTGCATTTGTCTCCTGCTGCTATAGTGAAGGAATTATCAACATACTTTCCAAAATTTTCTTCCCAAACTCGCCTTCTCACCCTTCCAGCACCTCATGAGCTTCCACCTCGTGAAGCACAAGAATATCAGAGACATTATCTGATCATCAATCATATTGGAGCCATCCGTGCGGAGCATGATGATTTTGTTATTCGTTTTGCTTCTGCAATGAATCAGCTGTTACTGTTGAAGTCAACTGATGGTTCTGATGTTGAATGGAGCAAAGAAGTCAAGGGGAACATGTATGATATGATTGTTGAAGGTTTTCAGCTATTAAGCAGATGGACTGCACGCATATGGGAACAATGTGCTTGGAAATTTTCTCGACCATGCAAAGATGCATCCCCATCATTCTCTGATTATGAAAAGGTAGTACGATATAATTACAGTGCAGAGGAAAGGAAAGCACTGGTTGAACTTGTGAGCTACATAAAGAGTGTTGGATCTATGATGCAGCGGTGTGATACACTGGTTGCTGATGCTTTATGGGAAACAATACATTCTGAGGTACAAGATTTTGTCCAAAACACATTAGCTACTATGTTGCGGACTACCTTCAGAAAGAAGAAGGACCTCTCTAGGATTCTTTCAGATATGCGGACCCTTTCAGCTGATTGGATGGCTAATACAAACAAGTCAGAATCTGAGTTACAGTCCTCTCAGCATGGAGGTGAAGAAAGCAAAGCAAACATATTTTATCCAAGAGCAGTTGCCCCAACTGCTGCTCAGGTGCACTGCTTGCAGTTCTTAATATATGAGGTGGTTTCTGGTGGTAACCTTAGGAGGCCAGGTGGACTCTTCGGCAATAGTGGCTCAGAAATTCCAGTTAATGATTTAAAACAGCTGGAGACATTTTTTTACAAGCTTGGTTTTTTCCTTCATATTTTAGACTACTCAGCAACTGTTGCAACATTGACAGATCTTGGTTTCTTATGGTTTAGAGAATTCTATTTAGAGTCTTCACGAGTCATTCAGTTTCCAATTGAATGCTCCCTTCCTTGGATGTTGGTGGATTGTGTACTTGAGTCACCGAATTCTGGTCTTCTCGAGAGTGTTCTAATGCCATTTGACATCTATAATGATTCAGCTCAGCAAGCCTTGGTGTTGCTGAAGCAACGGTTTTTATACGATGAAATTGAGGCTGAGGTGGATCATTGTTTTGATATATTTGTTACAAAATTATGTGAAACCATTTTCACATATTACAAAAGTTGGGCGGCATGTGAATTGCTTGATCCTTCATTCCTCTTTGCTTCGGACAATGCAGAAAAGTATGCCGTGCAACCCATAAGGCTCAATATGCTGCTTAAAATGACTAGAGTGAAGCTGCTTGGAAGGATGATTAATTTGCGAAGTTTGATCACTGAACGGATGAACAAGGTTTTCCGTGAAAATATTGAGTTTTTATTTGATCGTTTTGAGTGTCAGGATCTGTGTGCCATAGTGGAATTAGAGAAGTTGTTGGATGTCTTAAAACATTCCCATGAACTACTGTCTAGAGATCTTTCTGTAGACTCTTTTAGTCTCATGTTGAATGAGATGCAAGAGAACATTTCCCTTGTATCATTTTCTAGTCGATTGGCCTCACAGATTTGGTCTGAGATGCATAGTGATTTTTTGCCAAATTTCATTCTCTGCAATACTACTCAACGTTTTATCAGATCATCAAGAACGGTTCCTGTTCAAAAGCCATCTGTACCCTCTTCTAAGCCTAGTTTCTATTGTGGTACTCAAGATTTGAATTCTGCCCATCAAAGTTTTGCACGACTGCATAGTGGATTCTTTGGAACACCTCACATGTTTTCTATTGTTCGACTTCTGGGATCCCGATCATTACCTTGGCTTATTAGAGCTCTTCTTGATCACATATCAAACAAGATTACTTTGCTTGAACCAATGATTACAGGATTACAAGATTCTTTGCCAAAATCAATTGGGCTTCTTCCTTTCGATGGAGGTGTGACAGGTTGTGTGAGACTCGTTAAGGAGCATCTTAACTGGGAGACAAAATCAGAACTGAAAGCTGAGGTTCTTCATGGCATAAAAGAGATTGGAAGTGTATTATATTGGATGGGGCTTCTAGATATTGTGTTGAGAGAAAAGGATTCTATGGATTTCATGCAAACTGCTCCCTGGCTGGGCTTGCTTCCTGGAGCAGATGGTCAAATAGTAACTTCTCAAGATGGTGGAGACAGCCCTGTTGTTAGTTTGTTTAAATCAACAGCTGCTGCAATGGTTTCATACCCTGGCTGTCCATCACCTACCTCTTTCCACATTATGTCAAAACAAGCAGAAGCTGCAGATCTTTTATACAAGGCTAACTTGAACACTGGAAGTGTGCTGGAGTATGCACTTGCTTTCGCTAGTGCTGCGTTGGATAAATATTGTAATAAATGGAGTGCTGCACCCAAAACGGGCTTCATTGACATCACAATTTCTAAAGATTTCTATCGAATATACAGTGGTCTCCAAATTGGATACTTGGAAGAATCTGCCCAAGTGCCATCAAATAGTCATGAAAGGCTGGGAGATTCAATTGCTTGGGGGGGCTGCACTATAATTTATTTGCTTGGGCAGCAGCTGCATTTTGAGCTGTTTGACTTTTCATATCAGATCCTCAATATCGCAGAAGTGGAGGCTGCATCTGTTATGCAAACACATAAGAACTCACAATTTGCCGTGCAGGGATGGGAAGCCTTATTGGAAGCAATGAAAAAAGCAAGGAGATTAAATAACCATGTATTTTCTATGCTTAAAGCACGTTGCCCCCTTGAAGAAAAGACAGCTTGTGCTATTAAGCAAAGTGGTGCTCCAATACATCGTATAAAATTTGATAACACAGTTTCAGCATTTGAAACACTGCCGCAGAAAGGTTCTTAA
>Glyma19g43970.1 sequence type=predicted peptide gene model=Glyma19g43970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVPVEEAIAALSTFSLEDEQPEVQGPGVWVSTERGATESPIEYSDVSAYRLSLSEDTKALNQLNALTQEGKEMASVLYTYRSCVKALPQLPDSMKQSQADLYLETYQVLDLEMSRLREIQRWQASASSKLAADMQRFSRPERRINGPTISHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSGQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVFVVESLELDFALLFPERHVLLRVLPVLVVLVTSSEKDSESLYKRVKINRLINIFKNEAVIPAFPDLHLSPAAIVKELSTYFPKFSSQTRLLTLPAPHELPPREAQEYQRHYLIINHIGAIRAEHDDFVIRFASAMNQLLLLKSTDGSDVEWSKEVKGNMYDMIVEGFQLLSRWTARIWEQCAWKFSRPCKDASPSFSDYEKVVRYNYSAEERKALVELVSYIKSVGSMMQRCDTLVADALWETIHSEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANTNKSESELQSSQHGGEESKANIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRRPGGLFGNSGSEIPVNDLKQLETFFYKLGFFLHILDYSATVATLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDCVLESPNSGLLESVLMPFDIYNDSAQQALVLLKQRFLYDEIEAEVDHCFDIFVTKLCETIFTYYKSWAACELLDPSFLFASDNAEKYAVQPIRLNMLLKMTRVKLLGRMINLRSLITERMNKVFRENIEFLFDRFECQDLCAIVELEKLLDVLKHSHELLSRDLSVDSFSLMLNEMQENISLVSFSSRLASQIWSEMHSDFLPNFILCNTTQRFIRSSRTVPVQKPSVPSSKPSFYCGTQDLNSAHQSFARLHSGFFGTPHMFSIVRLLGSRSLPWLIRALLDHISNKITLLEPMITGLQDSLPKSIGLLPFDGGVTGCVRLVKEHLNWETKSELKAEVLHGIKEIGSVLYWMGLLDIVLREKDSMDFMQTAPWLGLLPGADGQIVTSQDGGDSPVVSLFKSTAAAMVSYPGCPSPTSFHIMSKQAEAADLLYKANLNTGSVLEYALAFASAALDKYCNKWSAAPKTGFIDITISKDFYRIYSGLQIGYLEESAQVPSNSHERLGDSIAWGGCTIIYLLGQQLHFELFDFSYQILNIAEVEAASVMQTHKNSQFAVQGWEALLEAMKKARRLNNHVFSMLKARCPLEEKTACAIKQSGAPIHRIKFDNTVSAFETLPQKGS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
