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Report for Sequence Feature Glyma19g43861

Feature Type:gene_model
Chromosome:Gm19
Start:49411353
stop:49412707
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g43861
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G14045AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:5907133-5908154 FORWARD LENGTH=122 SoyBaseE_val: 1.00E-16ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_G7L2W7UniRef Annotation by Michelle Graham. Most informative UniRef hit: C-Myc-binding protein n=1 Tax=Medicago truncatula RepID=G7L2W7_MEDTR SoyBaseE_val: 8.00E-33ISS
UniRef100_UPI000233EB91UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EB91 related cluster n=1 Tax=unknown RepID=UPI000233EB91 SoyBaseE_val: 4.00E-41ISS

Expression Patterns of Glyma19g43861
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g43861 not represented in the dataset
Glyma19g43861 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g43861
ParalogEvidenceComments
Glyma03g41240 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g43861 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g249300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g43861
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g43861
>Glyma19g43861.1   sequence type=CDS   gene model=Glyma19g43861   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCATTCAACAGAAATTAAGCTGTCCTTCCATCTCAGTGTATGAAAAGTTGAAAGCCGAATTCTCCGATCTGCAAATCAAATACAATGACCTTTTAGCAGCACACCACAAAACCTGCAAAGAGTTAGAAGAAATGAAAAGCTCGCATGCCTTGGCAGCGGCATCTACGAAGGAAACAACTGATAGTGAATCTCCTAAAGATGGGCTCTAA
Predicted protein sequences of Glyma19g43861
>Glyma19g43861.1   sequence type=predicted peptide   gene model=Glyma19g43861   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FIQQKLSCPSISVYEKLKAEFSDLQIKYNDLLAAHHKTCKELEEMKSSHALAAASTKETTDSESPKDGL*






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