SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g43780

Feature Type:gene_model
Chromosome:Gm19
Start:49355173
stop:49357880
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g43780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G04760AT Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR-like) superfamily protein | chr3:1303884-1305692 REVERSE LENGTH=602 SoyBaseE_val: 9.00E-161ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_G7I6A4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7I6A4_MEDTR SoyBaseE_val: 5.00E-162ISS
UniRef100_UPI000233EB8FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EB8F related cluster n=1 Tax=unknown RepID=UPI000233EB8F SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g43780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g43780
ParalogEvidenceComments
Glyma03g41170 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g43780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g248500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g43780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g43780
>Glyma19g43780.2   sequence type=CDS   gene model=Glyma19g43780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAGATGTCAGTCTTAAGAACTTTATTTCATTTTATTGCACAAAGGTGCTCGACCGAATGAAAAATAAGGGTTTTTCACCCGATATCGTCACCTACAACATTCTCATTGGTTCCCTTTGTTCCCGGGGAATGCTCCATGCAGCTCTTGAGTTTAAGAACCAGTTGCTGAAAGAAAACTTCAACCCCACCGTGGTTACCTACACCATTTTAATTGAAGCAACTCTTTTACAGGGTGGGATTGATGAGGCAATAAAGCTCTTGGATGAGATGTTTGAGATTAATCTTCAACCTGATGTGTTCCCTTACAACTCCATCATAATATGTGCAGAGAAGAATCAAGGGAAATGGGAGGCGGGTTTTGAATTGATGTCTGACATGGTTGCAAAAGGTTGTGAGGCTAACGTTGTGACGTACAGTGTTTTGATTAGTTCACTCTGTCGCGATGGGAAGGTTGAGGAGGGGGTGGGTTTGTTGAAGGATATGAAGAAAAAAGGTTTGGAACCTGATGGTTATTGCTATGACCCTTTGATTGCTGTTTTGTGCAAAGAGGGTAGAGTGGATTTGGCTATTGAGGTGTTGGATGTTATGATCTCGGACGGTTGCGTGCCGGATATTGTGAACTATAACACCATATTGGCTTGTTTGTGTAAGCAAAAAAGAGCTGATGAGGCTTTGAGCATTTTTGAGAAGTTGGGTGAAGTGGGGTGTTCTCCCAATGCTAGTTCCTACAACACAGTGTTCAGCGCTCTAGGGAGTAGTGGGCATAAAGTTAGAGCATTGGGGATGATTTTGGAGATGGATGGGATGGTGGATGAGGCCATTGAGTTGTTGGTGGACATGGAGATGGAGAGTAGTGAGTGTAAGCCAAGTGTTGTTAGTTACAACATTGTTCTTCTTGGGTTGTGCAGAGTGGGTAGAGTTAGTGATGCTACTGAAGTGTTGGCTGCGATGGTGGACAAAGGGTGTCTGCCAAATGAAACTACTTACACTTTTTTGATCGAAGGGATTGGTTTTGGGGGGTGGCTGAATGATGCTAGGGACTTGGCTACAACCCTTGTTAATATGGATGCTATTTCTGAACATTCATTTGAACGATTGTACAAAACATTTTGCAAGCTTGATGTGTACAGACAGCTTAATTTGTCTGACTAA
Predicted protein sequences of Glyma19g43780
>Glyma19g43780.2   sequence type=predicted peptide   gene model=Glyma19g43780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LDVSLKNFISFYCTKVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVTYTILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSIIICAEKNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEEGVGLLKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKVRALGMILEMDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCRVGRVSDATEVLAAMVDKGCLPNETTYTFLIEGIGFGGWLNDARDLATTLVNMDAISEHSFERLYKTFCKLDVYRQLNLSD*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo