Report for Sequence Feature Glyma19g43740
Feature Type: gene_model
Chromosome: Gm19
Start: 49296673
stop: 49298087
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g43740
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G31180 AT
Annotation by Michelle Graham. TAIR10: myb domain protein 14 | chr2:13286806-13288175 REVERSE LENGTH=249
SoyBase E_val: 2.00E-70 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009651 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salt stress
SoyBase N/A ISS
GO:0009723 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus
SoyBase N/A ISS
GO:0009733 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus
SoyBase N/A ISS
GO:0009751 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus
SoyBase N/A ISS
GO:0009753 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
PTHR10641 Panther
MYB-RELATED
JGI ISS
PF00249 PFAM
Myb-like DNA-binding domain
JGI ISS
UniRef100_I1NCD2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCD2_SOYBN
SoyBase E_val: 2.00E-157 ISS
UniRef100_Q0PJK0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB88 n=1 Tax=Glycine max RepID=Q0PJK0_SOYBN
SoyBase E_val: 3.00E-131 ISS
Expression Patterns of Glyma19g43740
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g43740
Paralog Evidence Comments
Glyma03g41100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g43740 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g248100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g43740
Coding sequences of Glyma19g43740
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g43740.1 sequence type=CDS gene model=Glyma19g43740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACGAGAACTCCTTGTTGTGAGAGAATGGGATTGAAGAAGGGACCTTGGACTGCTGAAGAAGATCAGATATTGGTTTCTCATATTCAACAATATGGCCATGGAAACTGGCGTGCCCTTCCTAAACAAGCTGGTTTGTTAAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATAAATTACTTGAGGCCTGATATTAAACGAGGGAAATTCAGCAAAGAAGAAGAACATACCATCCTAAAGCTACATGGAATTCTTGGAAACAGATGGTCTGCTATAGCGGCAAGCTTACCCGGAAGAACAGACAACGAAATAAAGAATTTTTGGCATACCCATTTGAAGAAGAGGATCCAGAAAAGTGGAGTGCACAATGGCAATGCTTCCTCACGTATCTTGCAAGAGGCACAAGCAAATACTAGTTTGGATGCATCAAGTGCTGCTTCTAGTACTGTCACTGCAAATGTAATGATTGCCAATTACGGTTTACCCGTAAGGAATATTAATCCACCTATTGCAGGATTTTACGGTGCAGTCTCCTCAGATACTTTTGGAGAAATTGAGGACAATCATGGTTCTTGTCAGCTCAGTGAAGAAATGGAATTTTGGTACAATATATTTATCAAATCAGGGCAAACATCATGA
Predicted protein sequences of Glyma19g43740
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g43740.1 sequence type=predicted peptide gene model=Glyma19g43740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTRTPCCERMGLKKGPWTAEEDQILVSHIQQYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEHTILKLHGILGNRWSAIAASLPGRTDNEIKNFWHTHLKKRIQKSGVHNGNASSRILQEAQANTSLDASSAASSTVTANVMIANYGLPVRNINPPIAGFYGAVSSDTFGEIEDNHGSCQLSEEMEFWYNIFIKSGQTS*