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Report for Sequence Feature Glyma19g43700

Feature Type:gene_model
Chromosome:Gm19
Start:49260346
stop:49265039
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g43700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G04460AT Annotation by Michelle Graham. TAIR10: peroxin-12 | chr3:1186641-1189094 FORWARD LENGTH=393 SoyBaseE_val: 0ISS
GO:0006625GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to peroxisome SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0007031GO-bp Annotation by Michelle Graham. GO Biological Process: peroxisome organization SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0016558GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0048598GO-bp Annotation by Michelle Graham. GO Biological Process: embryonic morphogenesis SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0005778GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisomal membrane SoyBaseN/AISS
GO:0008022GO-mf Annotation by Michelle Graham. GO Molecular Function: protein C-terminus binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG0826 KOG Predicted E3 ubiquitin ligase involved in peroxisome organization JGI ISS
PTHR12888Panther PEROXIN 12 JGI ISS
PF04757PFAM Pex2 / Pex12 amino terminal region JGI ISS
UniRef100_G7IAY3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peroxisome assembly protein n=1 Tax=Medicago truncatula RepID=G7IAY3_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233EBC3UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EBC3 related cluster n=1 Tax=unknown RepID=UPI000233EBC3 SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g43700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g43700
ParalogEvidenceComments
Glyma03g41050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g43700 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g247700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g43700
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g43700
>Glyma19g43700.2   sequence type=transcript   gene model=Glyma19g43700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAGGGTTAGATGAAAATCTAAAATCATTGTATTTTAATTAGGGATCCATTATACGTGTAAGGTGTAAACATATCATAGATAAATGGAAGCGAGCTAAGCATGGCGGTGGTTGGTGGTGGTGCCTGCCGGAATTGAATTGAAACAGTGAAGAAAGAGAGATGTTGTTTCAGGTGGGCGGGCAAGGCAGTCGCCCCACCTTCTTCGAGATGGCGGCGGCTCAACAACTTCCGGCGAGCCTCCGCGCCGCTCTGACATACTCCATCGGCGTCTTGGCCTTACGGAGACCCTTCCTTCACAAGCTCCTCGACTTCGAAGACGAATCCTTCGCCTTACTCATGCTCGTCCTCGAATCCCACACCTTACGAACCACAGATGCTTCCTTTTCCGAATCTCTCTACGGCCTCCGAAGAAGACCAGCCAATATCGCCCTCAAGAATGACGACGCCACTACCAGCAACACCGCATTACGGAGGCGCCAGAGAGTTCTTTCCGTTCTTTTTTTGGTTGTGTTGCCGTATTTGAAATCCAAGCTGCATTCAATCTACAACAGAGAAAGGGAAGCCAGGCTTCAAGCCACTCTATGGGGAGATGAAACCGAACACGATTATTCTCCAGTGTCAGTGCCAACCTCTGATGCCGGTGCCCCCGTTACAACGCGTGTCGCGAAGAGAGTTCAGAGAATTTTAGGGTTTTGCTACCCGTGGTTACATGCTAGTGCTGAGGGCTTGCAATTTGCTTACCAGCTCTTATACCTGTTGGATGCTACTGGATACTACTCGCTAGCACTGCACGCACTTGGGATTCATGTTTGCCGAGCTACAGGCCAGGAGCTGATGGATACCTCTTCTAGAATTTCAAAGATGCGTAACCGTGAACGTGAGAGACTTCGTGGGCCTCAATGGTTGAAGACATTGCAAGGAGCATTGCTCAGCTGTACGTACACTGTACTTGACTATGCACAAACCGGTTTGATTGCAGCAGTGTTCTTCTTTAAAATGATGGAATGGTGGTACCAATCTGCTGAGGAGAGAATGTCAGCTCCTACAGTATATCCTCCTCCCCCTCCTCCGCCTCCACCAAAGGTAGCCAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTATGCTCGCAAAAGCGTGCAAATCCATCTGTAGTTACTGTTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGTATAAGCGCTGCCCAATTACGTTAATGCCTTCAACAGTTGACCAGATAAGGAGACTCTTTCATGATGTCTAGGCCTGTTGGAGCTGGGGTTGGTAGAATTACAGTTATCTTGAGTACATAAGCAAAAGATTCCCAATTATTGTTGTACTACTAATGTATAGTATATCTTTCTCTTTTAGTAAGTGGCTTAATAAGAGGCATCATTTTTGTTATTTTCCCCTTATTCATTCGTCGCTCAGTAGCACTGCTGGTGGCTGGGTACTCTGCTTCGGCAAATGAACTATTGCCAATACAAGAAACATACAAATTGAGACCCTAATTATTACTCGATATTTGCACAAAACAATTGTGAAAGAAAGAACTTCAACTTAGAATAATCTATGCATAAAATAATTGAAGAACTGAATGATATAGTAAAGAAATGCATTTGTCACGAATATTCTTCCAGGGCTACAACAAAAATCACGATTCTTTATCACTCAGAAGAAAAAAACTGCCTGTAGGACCCTAGCTCAAACTTCTGCAGCACTGGCTTCAAACGCTCTTTCTAGTCTGGTCTGCAATGCAGTTGAACTCCTCTTTGGTTTCACATCCTGCAATACAAGCAGTTCTGATTTTGTCTACTAACTAATAGTAAATGTATAAAAATAAAATCGTA
Coding sequences of Glyma19g43700
>Glyma19g43700.1   sequence type=CDS   gene model=Glyma19g43700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTTTCAGGTGGGCGGGCAAGGCAGTCGCCCCACCTTCTTCGAGATGGCGGCGGCTCAACAACTTCCGGCGAGCCTCCGCGCCGCTCTGACATACTCCATCGGCGTCTTGGCCTTACGGAGACCCTTCCTTCACAAGCTCCTCGACTTCGAAGACGAATCCTTCGCCTTACTCATGCTCGTCCTCGAATCCCACACCTTACGAACCACAGATGCTTCCTTTTCCGAATCTCTCTACGGCCTCCGAAGAAGACCAGCCAATATCGCCCTCAAGAATGACGACGCCACTACCAGCAACACCGCATTACGGAGGCGCCAGAGAGTTCTTTCCGTTCTTTTTTTGGTTGTGTTGCCGTATTTGAAATCCAAGCTGCATTCAATCTACAACAGAGAAAGGGAAGCCAGGCTTCAAGCCACTCTATGGGGAGATGAAACCGAACACGATTATTCTCCAGTGTCAGTGCCAACCTCTGATGCCGGTGCCCCCGTTACAACGCGTGTCGCGAAGAGAGTTCAGAGAATTTTAGGGTTTTGCTACCCGTGGTTACATGCTAGTGCTGAGGGCTTGCAATTTGCTTACCAGCTCTTATACCTGTTGGATGCTACTGGATACTACTCGCTAGCACTGCACGCACTTGGGATTCATGTTTGCCGAGCTACAGGCCAGGAGCTGATGGATACCTCTTCTAGAATTTCAAAGATGCGTAACCGTGAACGTGAGAGACTTCGTGGGCCTCAATGGTTGAAGATGATGGAATGGTGGTACCAATCTGCTGAGGAGAGAATGTCAGCTCCTACAGTATATCCTCCTCCCCCTCCTCCGCCTCCACCAAAGGTAGCCAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTATGCTCGCAAAAGCGTGCAAATCCATCTGTAGTTACTGTTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGTATAAGCGCTGCCCAATTACGTTAATGCCTTCAACAGTTGACCAGATAAGGAGACTCTTTCATGATGTCTAG

>Glyma19g43700.2   sequence type=CDS   gene model=Glyma19g43700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTTTCAGGTGGGCGGGCAAGGCAGTCGCCCCACCTTCTTCGAGATGGCGGCGGCTCAACAACTTCCGGCGAGCCTCCGCGCCGCTCTGACATACTCCATCGGCGTCTTGGCCTTACGGAGACCCTTCCTTCACAAGCTCCTCGACTTCGAAGACGAATCCTTCGCCTTACTCATGCTCGTCCTCGAATCCCACACCTTACGAACCACAGATGCTTCCTTTTCCGAATCTCTCTACGGCCTCCGAAGAAGACCAGCCAATATCGCCCTCAAGAATGACGACGCCACTACCAGCAACACCGCATTACGGAGGCGCCAGAGAGTTCTTTCCGTTCTTTTTTTGGTTGTGTTGCCGTATTTGAAATCCAAGCTGCATTCAATCTACAACAGAGAAAGGGAAGCCAGGCTTCAAGCCACTCTATGGGGAGATGAAACCGAACACGATTATTCTCCAGTGTCAGTGCCAACCTCTGATGCCGGTGCCCCCGTTACAACGCGTGTCGCGAAGAGAGTTCAGAGAATTTTAGGGTTTTGCTACCCGTGGTTACATGCTAGTGCTGAGGGCTTGCAATTTGCTTACCAGCTCTTATACCTGTTGGATGCTACTGGATACTACTCGCTAGCACTGCACGCACTTGGGATTCATGTTTGCCGAGCTACAGGCCAGGAGCTGATGGATACCTCTTCTAGAATTTCAAAGATGCGTAACCGTGAACGTGAGAGACTTCGTGGGCCTCAATGGTTGAAGACATTGCAAGGAGCATTGCTCAGCTGTACGTACACTGTACTTGACTATGCACAAACCGGTTTGATTGCAGCAGTGTTCTTCTTTAAAATGATGGAATGGTGGTACCAATCTGCTGAGGAGAGAATGTCAGCTCCTACAGTATATCCTCCTCCCCCTCCTCCGCCTCCACCAAAGGTAGCCAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTATGCTCGCAAAAGCGTGCAAATCCATCTGTAGTTACTGTTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGTATAAGCGCTGCCCAATTACGTTAATGCCTTCAACAGTTGACCAGATAAGGAGACTCTTTCATGATGTCTAG
Predicted protein sequences of Glyma19g43700
>Glyma19g43700.1   sequence type=predicted peptide   gene model=Glyma19g43700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFQVGGQGSRPTFFEMAAAQQLPASLRAALTYSIGVLALRRPFLHKLLDFEDESFALLMLVLESHTLRTTDASFSESLYGLRRRPANIALKNDDATTSNTALRRRQRVLSVLFLVVLPYLKSKLHSIYNREREARLQATLWGDETEHDYSPVSVPTSDAGAPVTTRVAKRVQRILGFCYPWLHASAEGLQFAYQLLYLLDATGYYSLALHALGIHVCRATGQELMDTSSRISKMRNRERERLRGPQWLKMMEWWYQSAEERMSAPTVYPPPPPPPPPKVAKEGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYITQYKRCPITLMPSTVDQIRRLFHDV*

>Glyma19g43700.2   sequence type=predicted peptide   gene model=Glyma19g43700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFQVGGQGSRPTFFEMAAAQQLPASLRAALTYSIGVLALRRPFLHKLLDFEDESFALLMLVLESHTLRTTDASFSESLYGLRRRPANIALKNDDATTSNTALRRRQRVLSVLFLVVLPYLKSKLHSIYNREREARLQATLWGDETEHDYSPVSVPTSDAGAPVTTRVAKRVQRILGFCYPWLHASAEGLQFAYQLLYLLDATGYYSLALHALGIHVCRATGQELMDTSSRISKMRNRERERLRGPQWLKTLQGALLSCTYTVLDYAQTGLIAAVFFFKMMEWWYQSAEERMSAPTVYPPPPPPPPPKVAKEGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYITQYKRCPITLMPSTVDQIRRLFHDV*






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