SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G33320 | AT | Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein | chr2:14119526-14121334 REVERSE LENGTH=602 | SoyBase | E_val: 7.00E-53 | ISS |
| PF00168 | PFAM | C2 domain | JGI | ISS | |
| UniRef100_I1JRR2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JRR2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O22783 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calcium-dependent lipid-binding domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=O22783_ARATH | SoyBase | E_val: 3.00E-50 | ISS |
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Glyma19g43660 not represented in the dataset |
Glyma19g43660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g41010 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g247300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g43660.2 sequence type=CDS gene model=Glyma19g43660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGGCGGTTGCACCTCCGTACCAGCTCCTAGAAATCAACGTGATCTCGGCCCAAGAGCTGGCCCAGGTGTCGAAATCCGTTCGGGCCTACGCGGTGGCAGCGCAAATTGGCCACACCAACCCCACCTGGAACGAGAAGTTTGTCTTCCGCGTCGACGACAACTTCCTCAATTCCGACAACTCCGTCATCATGGTCGAGATCTACTCCCACGCCTGGCTCCGCCAGGTCCTCATCGGCACCGTCGCCGTCCTGGTTACCAACCTCCTCCCTCCCAACCGCAAACCCAAGCTCCGCTTCGTAGCCCTCCAAATTCGCCGTCCCTCCGGCCGCCCGCAAGGGATTCTCAACATCGGCATCAACCTCCTCGACAGCACCATGCGGAGCATGCCGCTTTATTCCGAACTCAGCTCCTCCGCTGTGGGCTATTGGGACAACATCATTAAAAACAAAAACGCGAAAACCGAGGACGACGACGACGACAATACTCAGCATCACCACTTGCCCTTGGATTCTAGTCTTTTGACGCTACAACGTTGTCAGAGCGAGAAAAACGACTCCACCGTTAATGATTACGCCTACCATGGGAATGCAAAGCATTACGGTTACGATGGGCAGGATTCGGACGAGGGTGTGCGGAAAGGTGGCGTTTTCAACGAAGGCTCGCTTATTTCAGATCCGTCGGTGGTGGCGGCGGCGATCGCGAAGGGGTTGTTACCCATGCCGCCGCCTGCGCCGTGCACTTCGGAGATCTCGGGGATGGATGGGTGGTCGGAGAATAGCGGCACGGAGGGGATGAAGACGAAGATTGAGAGGTGGAGGAACGAGCTTACGCCGGCGTATGAGGACTACGACGATGAGAGGAAGAAGGTGATGAGGAAAACGTCGAAGCGCGTGGGTCAGACGTCGAGACGGCGTGGGCGTGGCGGCGGGCCGTGTTCATGTTTCGGGTCGGTGTTTGGGATTGAGATTTCAATTACTTGCGGCGGGGGGAACCGCCGGAAAGGACAGGGAGGTGGCAAGGGCCGTGTAACTACCGCGTCGTCTGAACTCACTTACGATGATTCCTATATTTGA
>Glyma19g43660.2 sequence type=predicted peptide gene model=Glyma19g43660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSAVAPPYQLLEINVISAQELAQVSKSVRAYAVAAQIGHTNPTWNEKFVFRVDDNFLNSDNSVIMVEIYSHAWLRQVLIGTVAVLVTNLLPPNRKPKLRFVALQIRRPSGRPQGILNIGINLLDSTMRSMPLYSELSSSAVGYWDNIIKNKNAKTEDDDDDNTQHHHLPLDSSLLTLQRCQSEKNDSTVNDYAYHGNAKHYGYDGQDSDEGVRKGGVFNEGSLISDPSVVAAAIAKGLLPMPPPAPCTSEISGMDGWSENSGTEGMKTKIERWRNELTPAYEDYDDERKKVMRKTSKRVGQTSRRRGRGGGPCSCFGSVFGIEISITCGGGNRRKGQGGGKGRVTTASSELTYDDSYI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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