Glyma19g43630 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g43630

Feature Type:	gene_model
Chromosome:	Gm19
Start:	49226529
stop:	49232681
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g43630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18480	AT	Annotation by Michelle Graham. TAIR10: plant glycogenin-like starch initiation protein 6 \| chr5:6131307-6133787 REVERSE LENGTH=537	SoyBase	E_val: 0	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0016051	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
PTHR11183	Panther	GLYCOGENIN	JGI		ISS
PTHR11183:SF7	Panther	GLYCOGENIN	JGI		ISS
PF01501	PFAM	Glycosyl transferase family 8	JGI		ISS
UniRef100_G7I6U5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycogenin-1 n=1 Tax=Medicago truncatula RepID=G7I6U5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NCB7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCB7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g43630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g43630

Paralog	Evidence	Comments
Glyma03g40980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g43630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g247000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g43630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g43630

Limit To All Plant Sequences

>Glyma19g43630.2   sequence type=transcript   gene model=Glyma19g43630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGCGATTTATTCTTGGATTCCCGAAAATGACAGTGGAGAGGAGGCAGCATTTTCCCGTGGAACTCACTGCAGTGGATCACAAATCGCAAGCACGCAGCCAGAGAAGACCGCCAGAGTTCTGGTCAGAGACGACGGAGAAAACAAAACTTCGAAAATTCAATTCAACTTCCAACCATTATTTAATCCGCAACTATAAATTCAAGTCAGAGTCCTACCGAAAAAAAAAAGGTGGCGAATCGGAATCGAGTTACAATGAAATCAAATGATGTTACACGTTGGTTATGTTCGATACTATTTTGCATAGTTTTAGTTTGTGTTCAATTTGAAGGATGTGTGGGATCCAAGACTAAGAAAACGGACGAGGCATACGTCACTCTTTTGTACGGGGATGAATTCTTGTTGGGTGTTCGAGTTCTGGGCAAATCAATACGGAACACTGGATCCAACAAGGACATGGTCGTGTTGGTCTCCGATGGTGTGTCTGATTATGCCAAAAGCCTACTCCGGGCTGATGGGTGGATAGTGGAGATGATTAGTTTACTGGCTAATCCTAATCGAGTGCGTCCAAAGAGATTTTGGGGTGTCTACACAAAGCTCAAAATATTTAACATGACTGACTACAAGAAAGTTGTTTACCTTGATGCGGACACTATTGTGGTTAAAAATATTGATGATCTTTTCAAGTGTGGGAAATTCTGTGCTAATTTAAAGCATTCTGAGAGGTTGAATTCGGGAGTCATGGTTGTGGAGCCATCTGCAACTCTTTTTAATGACATGATGAGCAAAATAAAAACTACTGCATCTTACACTGGAGGCGATCAAGGATTTCTCAATTCATATTACTCTGGATTTCCCAATGCACATGTTTTTGAGCCAAATTTGAGCCCAGAGATGTTTAGTTCCAGACCCATTCCTGAAATGGAGCGACTATCAACACTGTATAATGCTGATGTTGGTCTTTACATGCTTGCTAACAAGTGGATGGTAGATGAGAATGAACTCCGTGTGATTCACTATACACTGGGCCCCCTTAAGCCTTGGGACTGGTGGACGTCTTGGCTTTTGAAACCTGTTGATGTCTGGCAGGATGTAAGGGAGCAGCTTGATGAATCCCTTCCTGGAACAGGAGGGGGCCAGAATTCTAAAGACAGTTTTCTTGTGAAATTTCTGTTTCTGCTACCATTCTGTGCTTTACTCTTCTGCTGCTATCATTCATTTACAAAGAATCAAGGGTACTTCAGTACACTTTGCAGAAGCTCACTATGTGATCAAGTCAGACACCTTTATTATAGGATTAGATCAAATGGACCACTTGCATATAATAGTATTTCGACATCAACAACCAATTCAGTCCATCAGCTCTTAAATGGTGCTCAGAACAAGGCTCCTGCATATTTGGGTGGCATTTCTGTCTGTGTCTGTTTTGTGGTTGCAGTGGTGTCTCTGGGACTAGCTCTCTTGATTGTTCCTCGGCAAGTGATGCCATGGACTGGATTGCTTTTGATGTATGAATGGACATTCACAATTTTCTTTATATTATTTGGAGGTTATATCCATTTGATTTATCAGTGGGGAAAAATAGTGGGATCACGCGTAGCATCTTCCTTGTCACAGCCTGGGTCTGATTATGATTCCGAAAAACGTCATCAGCGACAGATATCATCTTGTGATGTTGCTACATGGTACTATGGTTTAGGGATGGCCCTGTTGGCCATTGCAGCTCCATCGTTGCCTTGTCTTTTTGGAATTACTGCCTTGTTTTTAAGGTTAGGTTTGATGGTTGTTGGGGGCATAATATTGGCTTCTTTCATGACATATGCTTCCGAACATCTTGCTATCCGATCATTTCTCAAAGGCTTTGATGAGCGCGAAAATGCTCGAAATAGTGGCTCATGTTTCTTATGTTGATTTGATTGTGACAATTGCGAGTGGTGATGTAAACTATGGTCGATATTTTCTTCCCTTTTCAGCTTACATATGTAATGCTGTTCTAGTGGAAAATGTATTTAATGAATTTTTGTCTATCTTCTAACAATGTATTTTGCCGAGGTTCTGTTGTAATATTATTGTTATTCTTTCAGAAGATGACCTTATTCTATTGAAATCACACATAATGGTGTCTCAAAACAGCTCATTGATTTGACTTGGTTGAAGGCATAAACATGCATAATATGGTTCATAAAGTATGATTAGTTTTGTCGAGTATATTTTAGAGGGTAAATTGTTAATTTATCATTTAATGATGTGAG

Coding sequences of Glyma19g43630

Limit To All Plant Sequences

>Glyma19g43630.1   sequence type=CDS   gene model=Glyma19g43630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATCAAATGATGTTACACGTTGGTTATGTTCGATACTATTTTGCATAGTTTTAGTTTGTGTTCAATTTGAAGGATGTGTGGGATCCAAGACTAAGAAAACGGACGAGGCATACGTCACTCTTTTGTACGGGGATGAATTCTTGTTGGGTGTTCGAGTTCTGGGCAAATCAATACGGAACACTGGATCCAACAAGGACATGGTCGTGTTGGTCTCCGATGGTGTGTCTGATTATGCCAAAAGCCTACTCCGGGCTGATGGGTGGATAGTGGAGATGATTAGTTTACTGGCTAATCCTAATCGAGTGCGTCCAAAGAGATTTTGGGGTGTCTACACAAAGCTCAAAATATTTAACATGACTGACTACAAGAAAGTTGTTTACCTTGATGCGGACACTATTGTGGTTAAAAATATTGATGATCTTTTCAAGTGTGGGAAATTCTGTGCTAATTTAAAGCATTCTGAGAGGTTGAATTCGGGAGTCATGGTTGTGGAGCCATCTGCAACTCTTTTTAATGACATGATGAGCAAAATAAAAACTACTGCATCTTACACTGGAGGCGATCAAGGATTTCTCAATTCATATTACTCTGGATTTCCCAATGCACATGTTTTTGAGCCAAATTTGAGCCCAGAGATGTTTAGTTCCAGACCCATTCCTGAAATGGAGCGACTATCAACACTGTATAATGCTGATGTTGGTCTTTACATGCTTGCTAACAAGTGGATGGTAGATGAGAATGAACTCCGTGTGATTCACTATACACTGGGCCCCCTTAAGCCTTGGGACTGGTGGACGTCTTGGCTTTTGAAACCTGTTGATGTCTGGCAGGATGTAAGGGAGCAGCTTGATGAATCCCTTCCTGGAACAGGAGGGGGCCAGAATTCTAAAGACAGTTTTCTTGTGAAATTTCTGTTTCTGCTACCATTCTGTGCTTTACTCTTCTGCTGCTATCATTCATTTACAAAGAATCAAGGGTACTTCAGTACACTTTGCAGAAGCTCACTATGTGATCAAGTCAGACACCTTTATTATAGGATTAGATCAAATGGACCACTTGCATATAATAGTATTTCGACATCAACAACCAATTCAGTCCATCAGCAGCTCTTAAATGGTGCTCAGAACAAGGCTCCTGCATATTTGGGTGGCATTTCTGTCTGTGTCTGTTTTGTGGTTGCAGTGGTGTCTCTGGGACTAGCTCTCTTGATTGTTCCTCGGCAAGTGATGCCATGGACTGGATTGCTTTTGATGTATGAATGGACATTCACAATTTTCTTTATATTATTTGGAGGTTATATCCATTTGATTTATCAGTGGGGAAAAATAGTGGGATCACGCGTAGCATCTTCCTTGTCACAGCCTGGGTCTGATTATGATTCCGAAAAACGTCATCAGCGACAGATATCATCTTGTGATGTTGCTACATGGTACTATGGTTTAGGGATGGCCCTGTTGGCCATTGCAGCTCCATCGTTGCCTTGTCTTTTTGGAATTACTGCCTTGTTTTTAAGGTTAGGTTTGATGGTTGTTGGGGGCATAATATTGGCTTCTTTCATGACATATGCTTCCGAACATCTTGCTATCCGATCATTTCTCAAAGGCTTTGATGAGCGCGAAAATGCTCGAAATAGTGGCTCATGTTTCTTATGTTGA

>Glyma19g43630.2   sequence type=CDS   gene model=Glyma19g43630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATCAAATGATGTTACACGTTGGTTATGTTCGATACTATTTTGCATAGTTTTAGTTTGTGTTCAATTTGAAGGATGTGTGGGATCCAAGACTAAGAAAACGGACGAGGCATACGTCACTCTTTTGTACGGGGATGAATTCTTGTTGGGTGTTCGAGTTCTGGGCAAATCAATACGGAACACTGGATCCAACAAGGACATGGTCGTGTTGGTCTCCGATGGTGTGTCTGATTATGCCAAAAGCCTACTCCGGGCTGATGGGTGGATAGTGGAGATGATTAGTTTACTGGCTAATCCTAATCGAGTGCGTCCAAAGAGATTTTGGGGTGTCTACACAAAGCTCAAAATATTTAACATGACTGACTACAAGAAAGTTGTTTACCTTGATGCGGACACTATTGTGGTTAAAAATATTGATGATCTTTTCAAGTGTGGGAAATTCTGTGCTAATTTAAAGCATTCTGAGAGGTTGAATTCGGGAGTCATGGTTGTGGAGCCATCTGCAACTCTTTTTAATGACATGATGAGCAAAATAAAAACTACTGCATCTTACACTGGAGGCGATCAAGGATTTCTCAATTCATATTACTCTGGATTTCCCAATGCACATGTTTTTGAGCCAAATTTGAGCCCAGAGATGTTTAGTTCCAGACCCATTCCTGAAATGGAGCGACTATCAACACTGTATAATGCTGATGTTGGTCTTTACATGCTTGCTAACAAGTGGATGGTAGATGAGAATGAACTCCGTGTGATTCACTATACACTGGGCCCCCTTAAGCCTTGGGACTGGTGGACGTCTTGGCTTTTGAAACCTGTTGATGTCTGGCAGGATGTAAGGGAGCAGCTTGATGAATCCCTTCCTGGAACAGGAGGGGGCCAGAATTCTAAAGACAGTTTTCTTGTGAAATTTCTGTTTCTGCTACCATTCTGTGCTTTACTCTTCTGCTGCTATCATTCATTTACAAAGAATCAAGGGTACTTCAGTACACTTTGCAGAAGCTCACTATGTGATCAAGTCAGACACCTTTATTATAGGATTAGATCAAATGGACCACTTGCATATAATAGTATTTCGACATCAACAACCAATTCAGTCCATCAGCTCTTAAATGGTGCTCAGAACAAGGCTCCTGCATATTTGGGTGGCATTTCTGTCTGTGTCTGTTTTGTGGTTGCAGTGGTGTCTCTGGGACTAGCTCTCTTGATTGTTCCTCGGCAAGTGATGCCATGGACTGGATTGCTTTTGATGTATGAATGGACATTCACAATTTTCTTTATATTATTTGGAGGTTATATCCATTTGATTTATCAGTGGGGAAAAATAGTGGGATCACGCGTAGCATCTTCCTTGTCACAGCCTGGGTCTGATTATGATTCCGAAAAACGTCATCAGCGACAGATATCATCTTGTGATGTTGCTACATGGTACTATGGTTTAGGGATGGCCCTGTTGGCCATTGCAGCTCCATCGTTGCCTTGTCTTTTTGGAATTACTGCCTTGTTTTTAAGGTTAGGTTTGATGGTTGTTGGGGGCATAATATTGGCTTCTTTCATGACATATGCTTCCGAACATCTTGCTATCCGATCATTTCTCAAAGGCTTTGATGAGCGCGAAAATGCTCGAAATAGTGGCTCATGTTTCTTATGTTGA

Predicted protein sequences of Glyma19g43630

Limit To All Plant Sequences

>Glyma19g43630.1   sequence type=predicted peptide   gene model=Glyma19g43630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSNDVTRWLCSILFCIVLVCVQFEGCVGSKTKKTDEAYVTLLYGDEFLLGVRVLGKSIRNTGSNKDMVVLVSDGVSDYAKSLLRADGWIVEMISLLANPNRVRPKRFWGVYTKLKIFNMTDYKKVVYLDADTIVVKNIDDLFKCGKFCANLKHSERLNSGVMVVEPSATLFNDMMSKIKTTASYTGGDQGFLNSYYSGFPNAHVFEPNLSPEMFSSRPIPEMERLSTLYNADVGLYMLANKWMVDENELRVIHYTLGPLKPWDWWTSWLLKPVDVWQDVREQLDESLPGTGGGQNSKDSFLVKFLFLLPFCALLFCCYHSFTKNQGYFSTLCRSSLCDQVRHLYYRIRSNGPLAYNSISTSTTNSVHQQLLNGAQNKAPAYLGGISVCVCFVVAVVSLGLALLIVPRQVMPWTGLLLMYEWTFTIFFILFGGYIHLIYQWGKIVGSRVASSLSQPGSDYDSEKRHQRQISSCDVATWYYGLGMALLAIAAPSLPCLFGITALFLRLGLMVVGGIILASFMTYASEHLAIRSFLKGFDERENARNSGSCFLC*

>Glyma19g43630.2   sequence type=predicted peptide   gene model=Glyma19g43630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSNDVTRWLCSILFCIVLVCVQFEGCVGSKTKKTDEAYVTLLYGDEFLLGVRVLGKSIRNTGSNKDMVVLVSDGVSDYAKSLLRADGWIVEMISLLANPNRVRPKRFWGVYTKLKIFNMTDYKKVVYLDADTIVVKNIDDLFKCGKFCANLKHSERLNSGVMVVEPSATLFNDMMSKIKTTASYTGGDQGFLNSYYSGFPNAHVFEPNLSPEMFSSRPIPEMERLSTLYNADVGLYMLANKWMVDENELRVIHYTLGPLKPWDWWTSWLLKPVDVWQDVREQLDESLPGTGGGQNSKDSFLVKFLFLLPFCALLFCCYHSFTKNQGYFSTLCRSSLCDQVRHLYYRIRSNGPLAYNSISTSTTNSVHQLLNGAQNKAPAYLGGISVCVCFVVAVVSLGLALLIVPRQVMPWTGLLLMYEWTFTIFFILFGGYIHLIYQWGKIVGSRVASSLSQPGSDYDSEKRHQRQISSCDVATWYYGLGMALLAIAAPSLPCLFGITALFLRLGLMVVGGIILASFMTYASEHLAIRSFLKGFDERENARNSGSCFLC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain