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Report for Sequence Feature Glyma19g43590

Feature Type:gene_model
Chromosome:Gm19
Start:49210033
stop:49210924
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g43590
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
PF05678PFAM VQ motif JGI ISS
UniRef100_I1NCB5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCB5_SOYBN SoyBaseE_val: 1.00E-69ISS

Proteins Associated with Glyma19g43590
LocusGene SymbolProtein Name
VQ72 VQ motif containing protein gene 72

Expression Patterns of Glyma19g43590
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g43590 not represented in the dataset
Glyma19g43590 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g43590
ParalogEvidenceComments
Glyma03g40941 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g43590 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g246700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g43590
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g43590
>Glyma19g43590.1   sequence type=CDS   gene model=Glyma19g43590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAAAACTCCAAAGAAAACAGTGAAAATAACCTACATATCGAGTCCTGTGTTAGTGAGGGCCTACGATGCTTCTGAGTTTCGATCAGTGGTCCAACAACTCACGGGCAATGACTCCAACTCCAACAAGAAGGTTGAAAGGCCTCATAAGGGGTATAGCTCTACTTTGATGCATCAAAGGGTCATGCAAAGTCATGAAGATGCCCATGGGATCGGGTTGTATCATTACAACAGATCAACGACGACTTCTCTGGAGTTGGATGAAGATTACTACTGGAAAGAACTTGCACGTTCTGTTTTGCCGTGA
Predicted protein sequences of Glyma19g43590
>Glyma19g43590.1   sequence type=predicted peptide   gene model=Glyma19g43590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQKTPKKTVKITYISSPVLVRAYDASEFRSVVQQLTGNDSNSNKKVERPHKGYSSTLMHQRVMQSHEDAHGIGLYHYNRSTTTSLELDEDYYWKELARSVLP*






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