Glyma19g43400 - SoyBase

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Report for Sequence Feature Glyma19g43400

Feature Type:	gene_model
Chromosome:	Gm19
Start:	49058837
stop:	49065386
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g43400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G28840	AT	Annotation by Michelle Graham. TAIR10: GDP-D-mannose 3',5'-epimerase \| chr5:10862472-10864024 REVERSE LENGTH=377	SoyBase	E_val: 0	ISS
GO:0009225	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar metabolic process	SoyBase	N/A	ISS
GO:0019853	GO-bp	Annotation by Michelle Graham. GO Biological Process: L-ascorbic acid biosynthetic process	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0047918	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GDP-mannose 3,5-epimerase activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
GO:0051287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NAD binding	SoyBase	N/A	ISS
KOG1429	KOG	dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase	JGI		ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF35	Panther	gb def: udp-glucose 4-epimerase [bacillus halodurans]	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_B9VU69	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GDP-mannose-3',5'-epimerase n=1 Tax=Caragana korshinskii RepID=B9VU69_9FABA	SoyBase	E_val: 0	ISS
UniRef100_I1NC94	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NC94_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g43400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g43400

Paralog	Evidence	Comments
Glyma03g40720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g43400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g244600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g43400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g43400

Limit To All Plant Sequences

>Glyma19g43400.2   sequence type=CDS   gene model=Glyma19g43400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTAATAAAGACGGGCAACTAAATAAAAAGAAAGAAATCAATGGCATCCACCACACATGCATTCCAAACCCAACCGTATCCTTCATTCTTCTCCTAAATCCTAATCCTTCTTCACTTTCAGTTCTCAGCATGGGAAGTTCTGGAACAACCGACTATGGAGCATACACATACCAAAACCTTGAGAGGGAACCTTACTGGCCCTCTGAAAAGCTCAGAATTTCCATCACTGGGGCTGGTGGTTTCATTGCCTCACACATTGCTCGCCGCCTCAAGACCGAGGGACATTACATCATTGCTTCTGATTGGAAGAAGAATGAGCACATGACTGAGGACATGTTCTGCCATGAATTCCATCTTGTTGACCTTAGGGTCATGGATAACTGCTTGACAGTTACCAAGGGTGTGGACCATGTTTTCAATCTTGCTGCTGATATGGGTGGGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGAGACAAATGTGAGTTTGAAGGAGTCTGATGCCTGGCCTGCTGAGCCACAAGATGCATATGGGCTGGAGAAGCTTGCAACAGAAGAGTTATGCAAGCATTATAACAAGGATTTTGGAATTGAGTGCCGGATTGGGAGATTCCATAACATATATGGTCCTTATGGGACATGGAAGGGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGCAAGACACTTACTTCCAAAGATCGATTTGAGATGTGGGGAGATGGATTGCAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAGATTGACTAAATCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAATGGTCAGTATGAATGAGATGGCAGAGATTGTTCTTAGCTTTGAGGATAAGAATATACCAATATACCATATTCCTGGCCCAGAAGGTGTTCGGGGCCGTAATTCAGACAATACATTAATCAAAGAGAAACTTGGCTGGGCTCCAACTATGAAGTTGAAGGATGGGCTGAGAATTACATACTTTTGGATCAAAGAGCAGCTTGAGAAAGAGAAGGCAGAAGGTGTTGATTTATCAGGCTATGGATCATCCAAAGTGGTTCAGACTCAAGCCCCAGTTCAACTTGGCTCGCTACGTGCTGCAGATGGCAAAGAATAA

Predicted protein sequences of Glyma19g43400

Limit To All Plant Sequences

>Glyma19g43400.2   sequence type=predicted peptide   gene model=Glyma19g43400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNKDGQLNKKKEINGIHHTCIPNPTVSFILLLNPNPSSLSVLSMGSSGTTDYGAYTYQNLEREPYWPSEKLRISITGAGGFIASHIARRLKTEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLTVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGVKSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPYGTWKGGREKAPAAFCRKTLTSKDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKNIPIYHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQLEKEKAEGVDLSGYGSSKVVQTQAPVQLGSLRAADGKE*

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