SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G60690 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein | chr1:22349892-22351668 REVERSE LENGTH=345 | SoyBase | E_val: 4.00E-139 | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0004033 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aldo-keto reductase (NADP) activity | SoyBase | N/A | ISS |
| KOG1575 | KOG | Voltage-gated shaker-like K+ channel, subunit beta/KCNAB | JGI | ISS | |
| PTHR11732 | Panther | ALDO/KETO REDUCTASE | JGI | ISS | |
| PTHR11732:SF12 | Panther | OXIDOREDUCTASE | JGI | ISS | |
| PF00248 | PFAM | Aldo/keto reductase family | JGI | ISS | |
| UniRef100_C6TBN2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Probable aldo-keto reductase 1 n=1 Tax=Glycine max RepID=AKR1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NC90 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NC90_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g43360 not represented in the dataset |
Glyma19g43360 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g43360.1 sequence type=CDS gene model=Glyma19g43360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACAGAGTGTGGAAATTCCTCGTGTGAAACTCGGAACTCAAGGCCTTGAGGTTTCAAAGTTGGGATACGGTTGCATGGGCCTTACTGGTGCCTACAATGATCCTCTTCCTGAAGAGGAAGGCATATCTATTATTAAGCATGCTTTCAGCAAAGGAATCACTTTTTTCGACACATCTGATATTTATGGGCCAGACCATGCTAACGAAATTGTGGTCGGAAAGGCTTTAAAGCAGCTACCGAGAGAAAAGATCCAAATCGCGACGAAATTTGGCATTACAAAGATCGACTCTTCTGGAATGTTTGTTAAGGGTACACCAGAGTACGCTCGCTCATGTTGTGAAGCCAGCTTGAAACGTCTTGGTGTTGAATACATTGATCTCTATTACCAGCACAGAGTGGACTTATCTGTACCTATAGAAGAAACAATTGGTGAACTTAAGAAACTGGTGGAAGAGGGAAAAGTGAGGTATATTGGATTATCTGAAGCTAGTCCAGATACAATAAGGAGAGCACATGCTGTTCATCCCATCACTGCTGTTCAAATGGAGTGGTCCCTATGGACTCGTGACATTGAGGACGAGATAATTCCTCTCTGCAAGGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTGGTGGCAAAGGAGTTCTGGAAACTGTGTCAACAGTTAGCTCCCTGAAAAGAAAATTTACACATCCACGCTTCCGAGCTGAGAACTTGGACAAGAACAAAAAATTGTATGGCAAAATAGAAAGCCTTGCTACCAAACAACAGTGCACTCCTTCCCAGTTGGCACTAGCATGGGTGCTCCACCAAGGCAATGATGTTGTGCCTATTCCCGGAACTACTAAGGTTAAGAACCTAGATCAAAACATCGGTGCAGTATCATTGAAATTAACAGAAAGTGACCTGAGAGAAATTTCTGAGGCAGTTCCCATTGATGAAGTAGCCGGTACTCGACACTACTATGGATCGGCTAATTTTTCATGGACCGTTGCTAATACACCTCCAAAAGATCCGAGGGTTTAA
>Glyma19g43360.1 sequence type=predicted peptide gene model=Glyma19g43360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAQSVEIPRVKLGTQGLEVSKLGYGCMGLTGAYNDPLPEEEGISIIKHAFSKGITFFDTSDIYGPDHANEIVVGKALKQLPREKIQIATKFGITKIDSSGMFVKGTPEYARSCCEASLKRLGVEYIDLYYQHRVDLSVPIEETIGELKKLVEEGKVRYIGLSEASPDTIRRAHAVHPITAVQMEWSLWTRDIEDEIIPLCKELGIGIVPYSPLGRGFFGGKGVLETVSTVSSLKRKFTHPRFRAENLDKNKKLYGKIESLATKQQCTPSQLALAWVLHQGNDVVPIPGTTKVKNLDQNIGAVSLKLTESDLREISEAVPIDEVAGTRHYYGSANFSWTVANTPPKDPRV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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