SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g43360

Feature Type:gene_model
Chromosome:Gm19
Start:49027541
stop:49030255
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g43360
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G60690AT Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein | chr1:22349892-22351668 REVERSE LENGTH=345 SoyBaseE_val: 4.00E-139ISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0004033GO-mf Annotation by Michelle Graham. GO Molecular Function: aldo-keto reductase (NADP) activity SoyBaseN/AISS
KOG1575 KOG Voltage-gated shaker-like K+ channel, subunit beta/KCNAB JGI ISS
PTHR11732Panther ALDO/KETO REDUCTASE JGI ISS
PTHR11732:SF12Panther OXIDOREDUCTASE JGI ISS
PF00248PFAM Aldo/keto reductase family JGI ISS
UniRef100_C6TBN2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Probable aldo-keto reductase 1 n=1 Tax=Glycine max RepID=AKR1_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1NC90UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NC90_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g43360
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g43360 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g43360
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g43360
>Glyma19g43360.1   sequence type=CDS   gene model=Glyma19g43360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACAGAGTGTGGAAATTCCTCGTGTGAAACTCGGAACTCAAGGCCTTGAGGTTTCAAAGTTGGGATACGGTTGCATGGGCCTTACTGGTGCCTACAATGATCCTCTTCCTGAAGAGGAAGGCATATCTATTATTAAGCATGCTTTCAGCAAAGGAATCACTTTTTTCGACACATCTGATATTTATGGGCCAGACCATGCTAACGAAATTGTGGTCGGAAAGGCTTTAAAGCAGCTACCGAGAGAAAAGATCCAAATCGCGACGAAATTTGGCATTACAAAGATCGACTCTTCTGGAATGTTTGTTAAGGGTACACCAGAGTACGCTCGCTCATGTTGTGAAGCCAGCTTGAAACGTCTTGGTGTTGAATACATTGATCTCTATTACCAGCACAGAGTGGACTTATCTGTACCTATAGAAGAAACAATTGGTGAACTTAAGAAACTGGTGGAAGAGGGAAAAGTGAGGTATATTGGATTATCTGAAGCTAGTCCAGATACAATAAGGAGAGCACATGCTGTTCATCCCATCACTGCTGTTCAAATGGAGTGGTCCCTATGGACTCGTGACATTGAGGACGAGATAATTCCTCTCTGCAAGGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTGGTGGCAAAGGAGTTCTGGAAACTGTGTCAACAGTTAGCTCCCTGAAAAGAAAATTTACACATCCACGCTTCCGAGCTGAGAACTTGGACAAGAACAAAAAATTGTATGGCAAAATAGAAAGCCTTGCTACCAAACAACAGTGCACTCCTTCCCAGTTGGCACTAGCATGGGTGCTCCACCAAGGCAATGATGTTGTGCCTATTCCCGGAACTACTAAGGTTAAGAACCTAGATCAAAACATCGGTGCAGTATCATTGAAATTAACAGAAAGTGACCTGAGAGAAATTTCTGAGGCAGTTCCCATTGATGAAGTAGCCGGTACTCGACACTACTATGGATCGGCTAATTTTTCATGGACCGTTGCTAATACACCTCCAAAAGATCCGAGGGTTTAA
Predicted protein sequences of Glyma19g43360
>Glyma19g43360.1   sequence type=predicted peptide   gene model=Glyma19g43360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQSVEIPRVKLGTQGLEVSKLGYGCMGLTGAYNDPLPEEEGISIIKHAFSKGITFFDTSDIYGPDHANEIVVGKALKQLPREKIQIATKFGITKIDSSGMFVKGTPEYARSCCEASLKRLGVEYIDLYYQHRVDLSVPIEETIGELKKLVEEGKVRYIGLSEASPDTIRRAHAVHPITAVQMEWSLWTRDIEDEIIPLCKELGIGIVPYSPLGRGFFGGKGVLETVSTVSSLKRKFTHPRFRAENLDKNKKLYGKIESLATKQQCTPSQLALAWVLHQGNDVVPIPGTTKVKNLDQNIGAVSLKLTESDLREISEAVPIDEVAGTRHYYGSANFSWTVANTPPKDPRV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo