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Report for Sequence Feature Glyma19g43351

Feature Type:gene_model
Chromosome:Gm19
Start:49022589
stop:49023774
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g43351
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G60750AT Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein | chr1:22362293-22363854 REVERSE LENGTH=330 SoyBaseE_val: 8.00E-56ISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
PTHR11732Panther ALDO/KETO REDUCTASE JGI ISS
PTHR11732:SF12Panther OXIDOREDUCTASE JGI ISS
PF00248PFAM Aldo/keto reductase family JGI ISS
UniRef100_G7L1V7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein PCNT115 n=1 Tax=Medicago truncatula RepID=G7L1V7_MEDTR SoyBaseE_val: 2.00E-74ISS
UniRef100_I1JRM5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JRM5_SOYBN SoyBaseE_val: 2.00E-76ISS

Expression Patterns of Glyma19g43351
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g43351 not represented in the dataset
Glyma19g43351 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g43351
ParalogEvidenceComments
Glyma03g40680 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g43351 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g43351
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g43351
>Glyma19g43351.1   sequence type=CDS   gene model=Glyma19g43351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTCCCAGGGACTTGCCTCGAGATCAAATTCAGATTGCAACAAAGTTTGTGATTGTCAAAATGGAAAATGGTAATGTGATAGTGAACGGTTCCCCTGAATATGTTCGGTCCTGTTGCGAGGGTAGCCTCCAACGCCTTGGTGTCAGCTACATTGATCTCTATTATCAGCACTGTGTTGACACCACTGTACCCATTGAAGACACTATTGGAGAGCTTAAAAAGCTGGTCCAAGAGGGAAAAATAAGGTACATAGGATTGTCGGAAGCTAGCCTTGACACAATTAGAAGGGCACATGCTGTTTATCCCATTACTGCTGTGCAAATGGAGTGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGTAATATCGGTTCATTTGAAGTGAAACACAGTAAAGATGATTTAAAGGAGATTATAGATGCCGTACCAATATCTGAGGTGTCAGGGGATCGGACCACTGATGCATTTGTTAGATGTTCATGGAAGTTTGCTAATACTCCACCAAAAGCATTACTATATATACCAGTTATGCACCTTTGA
Predicted protein sequences of Glyma19g43351
>Glyma19g43351.1   sequence type=predicted peptide   gene model=Glyma19g43351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
APRDLPRDQIQIATKFVIVKMENGNVIVNGSPEYVRSCCEGSLQRLGVSYIDLYYQHCVDTTVPIEDTIGELKKLVQEGKIRYIGLSEASLDTIRRAHAVYPITAVQMEWSLWTREIEQDIVPLCSNIGSFEVKHSKDDLKEIIDAVPISEVSGDRTTDAFVRCSWKFANTPPKALLYIPVMHL*






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