Glyma19g43340 - SoyBase

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Report for Sequence Feature Glyma19g43340

Feature Type:	gene_model
Chromosome:	Gm19
Start:	49018510
stop:	49021407
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g43340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G29250	AT	Annotation by Michelle Graham. TAIR10: HXXXD-type acyl-transferase family protein \| chr4:14420713-14422177 FORWARD LENGTH=460	SoyBase	E_val: 6.00E-56	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
PF02458	PFAM	Transferase family	JGI		ISS
UniRef100_G7L1V1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Omega-hydroxypalmitate O-feruloyl transferase n=1 Tax=Medicago truncatula RepID=G7L1V1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NC89	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NC89_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g43340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g43340

Paralog	Evidence	Comments
Glyma03g40670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g43340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g244100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g43340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g43340

Limit To All Plant Sequences

>Glyma19g43340.1   sequence type=CDS   gene model=Glyma19g43340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAACTCGAGGGTAGCTCTGAACTCAAAACTAACGGTTGTGTCAAGCAGACCCGTTAGTTCTTCGGGTAAGGCTCATGCGCTATCCGCGCTGGACCGTGGCATGGGATCACACACACTGCATGTTATATACTACTACAAGAATGAGGAGAACTGGTTTGAGTCGTTTGATTTGAACTCTTTGAGGGAATCGTTGTCTGAGGTTCTGACTCTGTACCCTACTGTGACGGGTCGGTTGGGAATTAGAGGAGTGGATGGTGGGTGGGAAGTGAAGTGTAATGATGCGGGCGTTCGGGTCATAAAGGCCAGCGTGGATGCCACACTTGATCAATGGCTCAAATCTGCCTCTGGCTCCGAAGAGAACCTTCTGGTTGCTTGGGATCATATGCCTGATGATCCTACCACATGGTCTCCCTTCCGAATTCAGATAAACAGCTTCCAAGGGGGAGGGGTTGCAATAGGAATAAGTTGTAGTCACATGGTGGCAGATCTAACTTTCGTGGCATCATTTTTCAAATCATGGACCGAAGTTCACCGCCACTTGCCCATTACCCACCCTCCTTTCGTCGCTCCAAATCACGCAGATGCAGAGTCTCTCCCTCGCCATGCAAAAACAGATTCTCCGAGAAACATGGCCACAGCCACCTTCAAGTTTTCCACTTCAATCATCAATCAATGCCTCACCAAAGTCCATGACACGTGCCCCAACGCCACCCCATTTGATTTCCTCGCGGCTCTGTTTTGGTCTCGCATCGCTCGCGTCAAACCTCCAAAGAATCACCACCAAACACAGTCTCTATGCATTTGCACCGACTTTAGGAGTCTCATAAAAGCGTCACTCCCTATAGGGTACTTCGGCAATGCATTGCACTTTTCAATGCTCTCGCAGAAAGTGGAGGACATGGAGAGTGGCCAGTTAGGAGGCATAGTTAGTGCAGTGCATGGGCATTTGGGAGGGCTTTCAGAGGAAGAAATTTGGTCTACCAATGAAGGGAATTATTGCATGTATGGGACTGAGTTAACTTGTGTTTGCATGGAGCACTTGGTGTTTGAGGAAGAAAATGAGTCGTTGCTATATGCTGCAATGTTCGGGAATAACGAGAAACCAGTTCATGTTTCGTGTCGCGTGGGGAATGTGGATGGTGAAGGTTTGATCACAGTGATGCCTTCCTCAGTGGGAGGACTTTCGAGAACAGTGATGGTGATGCTTCCTGAGGAAGAACTCGCTGAACTAAGCAAAGACGAAGCAATATTGGAGTTGGAGCCAGCGATGCTTCTTGCTGGTTGTGTGGACCATTAG

Predicted protein sequences of Glyma19g43340

Limit To All Plant Sequences

>Glyma19g43340.1   sequence type=predicted peptide   gene model=Glyma19g43340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNSRVALNSKLTVVSSRPVSSSGKAHALSALDRGMGSHTLHVIYYYKNEENWFESFDLNSLRESLSEVLTLYPTVTGRLGIRGVDGGWEVKCNDAGVRVIKASVDATLDQWLKSASGSEENLLVAWDHMPDDPTTWSPFRIQINSFQGGGVAIGISCSHMVADLTFVASFFKSWTEVHRHLPITHPPFVAPNHADAESLPRHAKTDSPRNMATATFKFSTSIINQCLTKVHDTCPNATPFDFLAALFWSRIARVKPPKNHHQTQSLCICTDFRSLIKASLPIGYFGNALHFSMLSQKVEDMESGQLGGIVSAVHGHLGGLSEEEIWSTNEGNYCMYGTELTCVCMEHLVFEEENESLLYAAMFGNNEKPVHVSCRVGNVDGEGLITVMPSSVGGLSRTVMVMLPEEELAELSKDEAILELEPAMLLAGCVDH*

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