SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G04790 | AT | Annotation by Michelle Graham. TAIR10: Ribose 5-phosphate isomerase, type A protein | chr3:1313365-1314195 FORWARD LENGTH=276 | SoyBase | E_val: 3.00E-132 | ISS |
| GO:0000096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycine catabolic process | SoyBase | N/A | ISS |
| GO:0006569 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006636 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0006733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidoreduction coenzyme metabolic process | SoyBase | N/A | ISS |
| GO:0006766 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vitamin metabolic process | SoyBase | N/A | ISS |
| GO:0008652 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009052 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt, non-oxidative branch | SoyBase | N/A | ISS |
| GO:0009072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process | SoyBase | N/A | ISS |
| GO:0009106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipoate metabolic process | SoyBase | N/A | ISS |
| GO:0009108 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coenzyme biosynthetic process | SoyBase | N/A | ISS |
| GO:0009117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus | SoyBase | N/A | ISS |
| GO:0009684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0019253 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reductive pentose-phosphate cycle | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0019684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction | SoyBase | N/A | ISS |
| GO:0019748 | GO-bp | Annotation by Michelle Graham. GO Biological Process: secondary metabolic process | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0043900 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process | SoyBase | N/A | ISS |
| GO:0044272 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfur compound biosynthetic process | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0004751 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ribose-5-phosphate isomerase activity | SoyBase | N/A | ISS |
| KOG3075 | KOG | Ribose 5-phosphate isomerase | JGI | ISS | |
| PTHR11934 | Panther | RIBOSE-5-PHOSPHATE ISOMERASE | JGI | ISS | |
| PF06026 | PFAM | Ribose 5-phosphate isomerase A (phosphoriboisomerase A) | JGI | ISS | |
| UniRef100_G7L1U4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast ribose-5-phosphate isomerase n=1 Tax=Medicago truncatula RepID=G7L1U4_MEDTR | SoyBase | E_val: 8.00E-161 | ISS |
| UniRef100_I1NC83 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NC83_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma19g43310 not represented in the dataset |
Glyma19g43310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g40640 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g243800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g43310.1 sequence type=CDS gene model=Glyma19g43310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCCTATCCCTCTCCTCTCCCCCATCTCTCTCATCCGCACACCACAACGCCTCCACCCGCCTTATCCTGCGCACCCCTAACTCCCTTAACCTGCGCACCATACCCCATTCTCTCCCTATCCGCGCCATCACCCTCACCCAGGACGACCTCAAGAGACTCGCTGCCGACAAGGCCGTGGAGTCCGTCAAGAGCGGCATGGTCCTCGGCCTCGGCACCGGCTCCACCGCCGCCTTCGTCGTCGCCAAGCTCGGCGCACTCCTCGCCTCCGGCCAACTCACTGACATCGTCGGGGTCCCTACCTCCAAGCGCACGGAGGAGCAGGCCCGCTCTCTCGGCATCCCCCTCTCCGTCCTCGACCACAATCCCCGCCTCGATCTCGCCATCGACGGCGCCGACGAGGTCGACCCCGACCTCAACCTCGTCAAAGGCCGCGGCGGCGCCCTCCTCCGCGAGAAGATGGTCGAGGCCGCCTCCGACAAGTTCGTCGTGGTCGTCGACGACACAAAGCTGGTGGACGGCCTCGGCGGAAGCGGCCTGGCCATGCCGGTGGAGGTGGTCCAGTTCTGCTGGAAGTACAATCTGGATCGGCTTCAGGAGCTTTTCAAGGAAGAAGGCGTGGAAGCGAAATTAAGACTGGAGGAGAGTGGGAAACCCTACGTCAGCGATAATTCCAATTACATCGTCGATTTGTACTTCAAGACTCCTATCAGGGATGCATTGGCCGCTGGCGCCGAAATTTCCGCTCTCGAAGGCGTCGTCGACCACGGCTTGTTCTTGAACATGGCCACCTCTGTCATCATCGCTGCTAAATCCGGCGTTCAAGTCAGACTCAGACGCTAA
>Glyma19g43310.1 sequence type=predicted peptide gene model=Glyma19g43310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASLSLSSPPSLSSAHHNASTRLILRTPNSLNLRTIPHSLPIRAITLTQDDLKRLAADKAVESVKSGMVLGLGTGSTAAFVVAKLGALLASGQLTDIVGVPTSKRTEEQARSLGIPLSVLDHNPRLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDGLGGSGLAMPVEVVQFCWKYNLDRLQELFKEEGVEAKLRLEESGKPYVSDNSNYIVDLYFKTPIRDALAAGAEISALEGVVDHGLFLNMATSVIIAAKSGVQVRLRR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
