Report for Sequence Feature Glyma19g43300
Feature Type: gene_model
Chromosome: Gm19
Start: 48995941
stop: 48998264
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g43300
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G14750 AT
Annotation by Michelle Graham. TAIR10: IQ-domain 19 | chr4:8470449-8471903 FORWARD LENGTH=387
SoyBase E_val: 1.00E-32 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005516 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calmodulin binding
SoyBase N/A ISS
PTHR13140 Panther
MYOSIN
JGI ISS
PTHR13140:SF72 Panther
MYOSIN-IX A, B
JGI ISS
PF00612 PFAM
IQ calmodulin-binding motif
JGI ISS
UniRef100_G7L1U0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: IQ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7L1U0_MEDTR
SoyBase E_val: 6.00E-123 ISS
UniRef100_UPI000233EB87 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233EB87 related cluster n=1 Tax=unknown RepID=UPI000233EB87
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g43300
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g43300
Paralog Evidence Comments
Glyma03g40630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g43300 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g243700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g43300
Coding sequences of Glyma19g43300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g43300.2 sequence type=CDS gene model=Glyma19g43300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGAAGGCCAGAAAATGGATCAGAAACTTCCTTCTAGGGAAAAAAGAAGATAAAATCAAGAAGATCGAGGATAAGAGTCTGATTGTGAGTCCCAAAGTGAAGTGCAGATGGAGCTTTGGAAAACTAACAGGAGGAAGAATAACAAGCAAGGTAGTAGGCCATAAATTTTCCAGATCATTTGACTCAGGTGACTCTGCCAAGCTGCAAATACAACCCTTGTTGGAAACTAAGACTCCAAGGCATCTTCCAAAACCACTAGCAAAGGCTTCTAAAGATAAAAACAAAGCCGCTACAAAGATTCAGGCCAGCTTTCGCTCGTATTTGGCAAGGAGAGCATTGCATGCTTTAAGGGGATTAGTCAAGTTACAGGCACTAGTGAGGGGTCACCTTGTAAGGAAACAAACAACTGCTACACTACGTGGAATGCATGCGTTGATGGCCATACAAGTTAGAGCCCGAATTCACAGAATTCAGATGGCAGAGGAAGCAAACCTCCTCGGACAACAGCCTCTGCAACATAGACAACTCCCATACTTCACAGATCTCATTACAGAAGAAAATAAAGATTCAAACGATATGAGTGTGGAAGAAATAGTGGAGGTTTTGAAAAGCAGGAGTGGCCCACTAGATGGTTCATATGTTAAGGGAAGAGAGCGTGATTCCATGACATACTATTCGAAGCATGTGCCGGTTGTTTCTAAACGACAAAACCAATACAAGAAAACTCTAATGGTAGAACCAAACAGCCTAGGAAACTACCGTGCCATGTCTGAATTTAACCCAGCGACAATTGCCTTGTCAACTTCTCAGCGCCATTATGTGCCTCACCGTCAATCACTGTCACCAAATTACATGAACAAGACAGAATCTTCAAGGGCTAAAGCAAGGTCACAGAGTGAACCGAAACAACGACCAAGACGGGGAACGAGGCACAAAGGCAAGTCTGTGGAATCCCCATTGAATGGTCCAAGGCAAAATCTATTCTCAAACTCGTTACGCTTCGATCACAGAAGCCTGGACCATTGGGTTATCAATCCTCATGGGTCAAAAAACGACAGCAGGCGCAATTCCTTTGGCAGCAGCTCGGTTACTACTGAATCCTATTATTGA
Predicted protein sequences of Glyma19g43300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g43300.2 sequence type=predicted peptide gene model=Glyma19g43300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGKARKWIRNFLLGKKEDKIKKIEDKSLIVSPKVKCRWSFGKLTGGRITSKVVGHKFSRSFDSGDSAKLQIQPLLETKTPRHLPKPLAKASKDKNKAATKIQASFRSYLARRALHALRGLVKLQALVRGHLVRKQTTATLRGMHALMAIQVRARIHRIQMAEEANLLGQQPLQHRQLPYFTDLITEENKDSNDMSVEEIVEVLKSRSGPLDGSYVKGRERDSMTYYSKHVPVVSKRQNQYKKTLMVEPNSLGNYRAMSEFNPATIALSTSQRHYVPHRQSLSPNYMNKTESSRAKARSQSEPKQRPRRGTRHKGKSVESPLNGPRQNLFSNSLRFDHRSLDHWVINPHGSKNDSRRNSFGSSSVTTESYY*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
