Report for Sequence Feature Glyma19g43250
Feature Type: gene_model
Chromosome: Gm19
Start: 48953636
stop: 48955507
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g43250
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G28150 AT
Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF868) | chr5:10135826-10136695 FORWARD LENGTH=289
SoyBase E_val: 1.00E-133 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
PF05910 PFAM
Plant protein of unknown function (DUF868)
JGI ISS
UniRef100_I1NC76 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NC76_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q8RX84 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: AT5g28150/T24G3_80 n=1 Tax=Arabidopsis thaliana RepID=Q8RX84_ARATH
SoyBase E_val: 7.00E-131 ISS
Expression Patterns of Glyma19g43250
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g43250
Paralog Evidence Comments
Glyma03g40580 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g43250 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g243200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g43250
Coding sequences of Glyma19g43250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g43250.1 sequence type=CDS gene model=Glyma19g43250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGGATTTTCCTTCTTGTTTTGGTGAAAATGGAGTTCAAGTGGCGGATTCTTCGTCTTCAAGCGCTAATAAAAGTGCCCAGAATGTGGTTACCTGTGTTTATCAATGCAGGATTGGCGGTATTTCCTGCCTGATTACTGTCACGTGGAGTAAGAATCTGATGGGGCAAGGCCTTGGCGTTGGGATCGACGATTCATCAAGCCAGAGTCTTTGTAAGGTGGATATCAAACCGTGGGGGTTTTCCAAGAGGAGAGGTTGCAAGAGTCTAGAGGTTCATTCTTGTAAAGTTGATGTGTATTGGGACCTTTCTTCGGCTAAATTTGGTTCTGGGCCGGAACCTCTGGGGGGATTTTATGTTGGAGCTGTCGTGGATGGACAAATGGTACTTCTTCTGGGGGATTTGAGGAAAGAAGCTTTCAAGAAGACCAATGCCAACCCATTACCCCACAATGCAGTGTTGGTTGCCAAGAAAGAACATGTTTTTGGTAAGAAGTTGCATGGTACCAAGGCTGTGTTTTGTGACAATGGCCCAATTCATGATCTTGTGATTGAGTGTGACACTGCAAGTGTTGGTGATCCGAGCCTTGTAATTCGCATAGACAGCAAAACTGTGATGCAAGTGAAGCGGTTGAGATGGAAGTTCAGGGGGAATCATACTATCCTGGTAGATGGCCTTGCAGTGGAAGTTTTCTGGGATGTTCATAATTGGTTCTTTGGTACATCCCTTGGAAATGCGGTCTTTATGTTCAGGACATGCCTCTCCGCAGCGGACAAGTTGTGGGCTAGCCAACCACCTTCTGATTTGGCATGGTCTTTCTCCGAGAGATTTCCTGAGACCAAATTGCAGGGTCTCAGTTTCTCTCTTATTTTGTATGCTTGGAAGAACCAGTAG
Predicted protein sequences of Glyma19g43250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g43250.1 sequence type=predicted peptide gene model=Glyma19g43250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKDFPSCFGENGVQVADSSSSSANKSAQNVVTCVYQCRIGGISCLITVTWSKNLMGQGLGVGIDDSSSQSLCKVDIKPWGFSKRRGCKSLEVHSCKVDVYWDLSSAKFGSGPEPLGGFYVGAVVDGQMVLLLGDLRKEAFKKTNANPLPHNAVLVAKKEHVFGKKLHGTKAVFCDNGPIHDLVIECDTASVGDPSLVIRIDSKTVMQVKRLRWKFRGNHTILVDGLAVEVFWDVHNWFFGTSLGNAVFMFRTCLSAADKLWASQPPSDLAWSFSERFPETKLQGLSFSLILYAWKNQ*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
