SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G04880 | AT | Annotation by Michelle Graham. TAIR10: DNA-damage-repair/toleration protein (DRT102) | chr3:1346431-1347363 REVERSE LENGTH=310 | SoyBase | E_val: 1.00E-159 | ISS |
| GO:0000719 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoreactive repair | SoyBase | N/A | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009411 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| PF02502 | PFAM | Ribose/Galactose Isomerase | JGI | ISS | |
| PF07883 | PFAM | Cupin domain | JGI | ISS | |
| UniRef100_G7L0V6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA-damage-repair/toleration protein DRT102 n=1 Tax=Medicago truncatula RepID=G7L0V6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NC74 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NC74_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g43230 not represented in the dataset |
Glyma19g43230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g243000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g43230.1 sequence type=CDS gene model=Glyma19g43230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCAGAACCCACCCGCCCCGTAAAAATCATCGCCGCCGCCGATGACTTCGGCACTCCTCTCAAAGACGCCCTCGTCGCTCACTTGCGCACTCTCAACATCCAAGTCGAAGATCTCGGAACCTCTTCCTACTACTCCGCCGGAGCCGAGGTCGGTCGCCGAGTCTCCCAATCCTCCTCCTCCGACATCCGTGGCCTCGTCGCCTGCGGCACCGGCGCCGGCGTCTCCATCTTCGCCAACAAATATCCCGGCGTCTACGCCGCCACGTGCCTCTCCCCCTCCGACGCCGTCAACGCCCGCTCCATCAACAACTCCAACGTCCTCGCCGTCTCCGGCAAGTACACGTCGCCAGAGGCCGCAGTCGAGGTCCTGGACGCGTGGCTGAACACGCCGTTCAAGTCCGCGTGCCCGGCCAACGACGACAAGCCCTGGCCGCAGGAGATTCACTCCTTTCTCGAACACTCGCTCGTGGAGATGCCGGAGATCGGAAAAGAGGGCGCGTTTGACACGTGCGCGGTGTGCTGTCTGGTGAAGAACCGGGAACTGAATCCGATCGATTTGATTCCGGGCGGGTCGATGAAGATTCTAAGGGAAACTCCGACGTCGGCGTTCGTGAGGTTCAAGGCCGGGAGCGTGGAGCCCGCACACCACCACACGTTTGGGCACGACTTGGTTGTGATCGAAGGGAAGAAGAGCGTTTGGAATCTGACGAAGGAACAGAGGTATGATCTGACGGTTGGGGATTATTTATTCACTCCCCCAGGGGATGTGCATAGGGTTAAGTATCATGAGGATACTGAATTTTTCATCAAGTGGGATGGCCATTGGGATATGTTCTTTGACGAGGATCTCGACACTGCTAAAAACGCTATTGATAAGGAGTTAGGATTAGCCAAGTGA
>Glyma19g43230.1 sequence type=predicted peptide gene model=Glyma19g43230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAEPTRPVKIIAAADDFGTPLKDALVAHLRTLNIQVEDLGTSSYYSAGAEVGRRVSQSSSSDIRGLVACGTGAGVSIFANKYPGVYAATCLSPSDAVNARSINNSNVLAVSGKYTSPEAAVEVLDAWLNTPFKSACPANDDKPWPQEIHSFLEHSLVEMPEIGKEGAFDTCAVCCLVKNRELNPIDLIPGGSMKILRETPTSAFVRFKAGSVEPAHHHTFGHDLVVIEGKKSVWNLTKEQRYDLTVGDYLFTPPGDVHRVKYHEDTEFFIKWDGHWDMFFDEDLDTAKNAIDKELGLAK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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