Glyma19g43180 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g43180

Feature Type:	gene_model
Chromosome:	Gm19
Start:	48910027
stop:	48911975
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g43180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G28040	AT	Annotation by Michelle Graham. TAIR10: DNA-binding storekeeper protein-related transcriptional regulator \| chr5:10037654-10038937 REVERSE LENGTH=427	SoyBase	E_val: 6.00E-89	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF04504	PFAM	Protein of unknown function, DUF573	JGI		ISS
UniRef100_B9RET1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription regulator, putative n=1 Tax=Ricinus communis RepID=B9RET1_RICCO	SoyBase	E_val: 6.00E-89	ISS
UniRef100_I1NC70	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NC70_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g43180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g43180

Paralog	Evidence	Comments
Glyma03g40520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g43180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g242600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g43180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g43180

Limit To All Plant Sequences

>Glyma19g43180.1   sequence type=CDS   gene model=Glyma19g43180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCAGCAACACGACGCCGTTTTCCGCGAAGAAGACATGGACGACGACGACGACGAGTCTCAGGAGGACGGAGACTACGAAGAAGAAGACGACGACGTTTTGGCCGACGACGAAGAAAACGAGCCCTCTCCCTCCACGGCTCTTGCCGTCACCGTCGCCGTCCCCGGTTCCTCCGTCTCCAACGGCGGTGCCGCTCCAATTTCGACGCCCACCGCCACCACCATCGTCGTCGCAGACTCCTCCGATCCGAAGCGGCGGCGCCTCGAGCCAGTCGAGGAGAAAAAGCCGCCGCCGACGCCGGACGACTCGCGGCGGCTGTTTCAGCGGCTGTGGACCGACGAGGACGAGATCGAGCTCTTGCAAGGCTTCCTAGACTACACCTCGCAGCGAGGATCCTCGCACCACAACGACACGGCTTTGTTCTACGACCAAATCAAGTCGAAGCTCCAACTCGATTTCAACAAGAACCAGCTCGTCGAGAAGATCCGAAGGCTGAAGAAGAAGTACCGAAACGTCCTCAACAAGATTGGCTCCGGCAAGGAATTCTCCTTCAAGAGCGCTCACGATCAAGCCACCTTCGAAATCTCGCGCAAGATCTGGAGCAACGTGACTCCAATCGGCGACAATTCCTTGGACGACGACGAAATCAACCCTAACCGTAGCCCCAACCCTAACCTTAATTTTAGCCCTATAATTCTTAAGAATGAAATGATTTTCAGGAACCCCGCGGAGAAGAAAACACCGAAACGCTCTCGGCCACGATCGGCGGTGAAAATCGAGCCAAATGACGGATCCGCGTCGAACAGAGATCATGATTGTATTAGCAATGCTACGCCTACTGCTACTGCTACTGCTGCTGCTACTAACACTACTCCTACTGCAGCTACTACTAATGATAACTGTAACAGTGGTTATGGAAATAACATACCGAGTATGATCGAGGAGACGGTGAGGAGTTGTTTGTCGCCGGTGTTGAAGGAGTTGATGGCAGGGGCCATGGGAGGAGGAGCGTTTGGAGCGAGAGGGTTTTCGTTGAACTTGAACCCTATGCCTTTGATGAATTGGAGTTTTGGCGGTGGGGAAATGGTGGATGAGAAATGGAGGAAACAACAGATATTGGAGTTGGAAGTGTACTCAAAGCGGTTGGAGCTGGTTCAGGATCAGATCAAGGCTGCTATGGAGGAGTTGCGGTCACACGGAGGAGGTTGA

Predicted protein sequences of Glyma19g43180

Limit To All Plant Sequences

>Glyma19g43180.1   sequence type=predicted peptide   gene model=Glyma19g43180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASQQHDAVFREEDMDDDDDESQEDGDYEEEDDDVLADDEENEPSPSTALAVTVAVPGSSVSNGGAAPISTPTATTIVVADSSDPKRRRLEPVEEKKPPPTPDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFSFKSAHDQATFEISRKIWSNVTPIGDNSLDDDEINPNRSPNPNLNFSPIILKNEMIFRNPAEKKTPKRSRPRSAVKIEPNDGSASNRDHDCISNATPTATATAAATNTTPTAATTNDNCNSGYGNNIPSMIEETVRSCLSPVLKELMAGAMGGGAFGARGFSLNLNPMPLMNWSFGGGEMVDEKWRKQQILELEVYSKRLELVQDQIKAAMEELRSHGGG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain