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Report for Sequence Feature Glyma19g43120

Feature Type:gene_model
Chromosome:Gm19
Start:48873291
stop:48876898
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g43120
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G56450AT Annotation by Michelle Graham. TAIR10: 20S proteasome beta subunit G1 | chr1:21141970-21144186 FORWARD LENGTH=246 SoyBaseE_val: 4.00E-148ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0043248GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome assembly SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0051603GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis involved in cellular protein catabolic process SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0000502GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005839GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome core complex SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0004175GO-mf Annotation by Michelle Graham. GO Molecular Function: endopeptidase activity SoyBaseN/AISS
GO:0004298GO-mf Annotation by Michelle Graham. GO Molecular Function: threonine-type endopeptidase activity SoyBaseN/AISS
GO:0008233GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidase activity SoyBaseN/AISS
KOG0185 KOG 20S proteasome, regulatory subunit beta type PSMB4/PRE4 JGI ISS
PTHR11599Panther PROTEASOME SUBUNIT ALPHA/BETA JGI ISS
PTHR11599:SF5Panther PROTEASOME BETA SUBUNIT JGI ISS
PF00227PFAM Proteasome subunit JGI ISS
UniRef100_I1NC65UniRef Annotation by Michelle Graham. Most informative UniRef hit: Proteasome subunit beta type n=1 Tax=Glycine max RepID=I1NC65_SOYBN SoyBaseE_val: 2.00E-170ISS
UniRef100_I1NC65UniRef Annotation by Michelle Graham. Best UniRef hit: Proteasome subunit beta type n=1 Tax=Glycine max RepID=I1NC65_SOYBN SoyBaseE_val: 2.00E-170ISS

Expression Patterns of Glyma19g43120
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g43120
ParalogEvidenceComments
Glyma03g40470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g43120 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g242200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g43120
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g43120
>Glyma19g43120.2   sequence type=transcript   gene model=Glyma19g43120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGTATTTTGGTTTGGATTGTGGCTTACGAAATTGCACTTTGGAACCGACGTCGTTTTGCGGTGAATCATACTTGGGCACACTATTATTCTACCATTTTCGTTCTCTGCGTTTTCTTTCTTCTTCTTCTTCAAGACTGCGACGACGATCCAAGTGATAGACACTCGTCGCGATGGAACGTGTAGCTGAATCCGAGCGAACTCTGTACCCATACGTGACTGGATCCTCTGTAGTCGCTATCAAATACAAAGATGGGATTCTAATGGCCGCTGACATGGGAGGTCTGATATTTAATCTGGTTTTTATCTTCGTGTTAAATTGCTCTTAATCTGATTATTCTGGAAATTGATTTCCCATAGTCTTTTGTTTTCTTTGAAGTAAAAAAATATATATATATGGAGAAATTCAATTTGATTCCTTACTGGCGCTGGTTTTAATTGTTGATTTCTGATTCACAAATGTGCCATATCTCTGCAAATTTCGTCATAGATTAATGGTGCTTTTAAGTATTGAAATCATTTTGCGTATCATGTCAATGGGGGATATATTGATAGGTTCGTATGGATCTACCCTGCGGTACAAGAGTGTTGAGCGTATCAAGCCTATTGGAAAGCATTCTCTTCTTGGTGCTAGCGGGGAGATAAGTGACTTTCAGGAGATTCTGCGTTACCTTGATGAGCTTATCCTATATGACAACATGTGGGATGATGGGAATTCTCTAGGGCCGAAGGAGGTGCATAATTATTTAACCCGTGTGATGTATAATAGACGTAACAAGTTCAACCCATTGTGGAATGCACTTGTACTTGGTGGGGTGAAAAACGGGCAGAAGTACCTTGGCATGGTTAACATGATTGGCATTAATTTTGAGGACAACCATGTAGCAACCGGGCTTGGAAATCATCTCGCTAGGCCAATTCTCCGTGATGAGTGGCATGAAAACTTGACCTTTGAAGAGGGCGTCAAGTTACTGGAAAAATGCATGCGTGTGCTTTTATACCGTGATAGGTCTGCTGTCAACAAAATCCAGATATCTAAAATTACAGATGAAGGTGCCACTGTTTTCCCACCATTCTCATTGAAAACGTACTGGGAGTTCTCTGCCTTCAAGAATCCAACTGTGGGCGCTGAAGGTTCATGGTAACTGACTCATTGTGAAATGAAACAGAATTTTAAATGGATATGAAATGGATTCCAATAGAACTCTTTAAGGTGTTAATGGATATTAAATTAGACTTGGTGTTTTTATATTTTTTTTAAAGATTCCTATGATGGTCCAAATTGATATTTTCATTAGAATTTCTATTCCAGTTTCCTTTCATTATGACATTCATCATAGGCATTTTTCTTTTTCAATTGCTTGCATAGACATCAACGCGGTGCTCGTGTTTGAAATTAATCATGCAAAGATTTGTCAACAAGTCTCATTCGTTATACTTTAGATTCCTTTAGAAACTAG
Coding sequences of Glyma19g43120
>Glyma19g43120.1   sequence type=CDS   gene model=Glyma19g43120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACGTGTAGCTGAATCCGAGCGAACTCTGTACCCATACGTGACTGGATCCTCTGTAGTCGCTATCAAATACAAAGATGGGATTCTAATGGCCGCTGACATGGGAGGTTCGTATGGATCTACCCTGCGGTACAAGAGTGTTGAGCGTATCAAGCCTATTGGAAAGCATTCTCTTCTTGGTGCTAGCGGGGAGATAAGTGACTTTCAGGAGATTCTGCGTTACCTTGATGAGCTTATCCTATATGACAACATGTGGGATGATGGGAATTCTCTAGGGCCGAAGGAGGTGCATAATTATTTAACCCGTGTGATGTATAATAGACGTAACAAGTTCAACCCATTGTGGAATGCACTTGTACTTGGTGGGGTGAAAAACGGGCAGAAGTACCTTGGCATGGTTAACATGATTGGCATTAATTTTGAGGACAACCATGTAGCAACCGGGCTTGGAAATCATCTCGCTAGGCCAATTCTCCGTGATGAGTGGCATGAAAACTTGACCTTTGAAGAGGGCGTCAAGTTACTGGAAAAATGCATGCGTGTGCTTTTATACCGTGATAGGTCTGCTGTCAACAAAATCCAGATATCTAAAATTACAGATGAAGGTGCCACTGTTTTCCCACCATTCTCATTGAAAACGTACTGGGAGTTCTCTGCCTTCAAGAATCCAACTGTGGGCGCTGAAGGTTCATGGTAA

>Glyma19g43120.2   sequence type=CDS   gene model=Glyma19g43120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCTTTTAAGTATTGAAATCATTTTGCGTATCATGTCAATGGGGGATATATTGATAGGTTCGTATGGATCTACCCTGCGGTACAAGAGTGTTGAGCGTATCAAGCCTATTGGAAAGCATTCTCTTCTTGGTGCTAGCGGGGAGATAAGTGACTTTCAGGAGATTCTGCGTTACCTTGATGAGCTTATCCTATATGACAACATGTGGGATGATGGGAATTCTCTAGGGCCGAAGGAGGTGCATAATTATTTAACCCGTGTGATGTATAATAGACGTAACAAGTTCAACCCATTGTGGAATGCACTTGTACTTGGTGGGGTGAAAAACGGGCAGAAGTACCTTGGCATGGTTAACATGATTGGCATTAATTTTGAGGACAACCATGTAGCAACCGGGCTTGGAAATCATCTCGCTAGGCCAATTCTCCGTGATGAGTGGCATGAAAACTTGACCTTTGAAGAGGGCGTCAAGTTACTGGAAAAATGCATGCGTGTGCTTTTATACCGTGATAGGTCTGCTGTCAACAAAATCCAGATATCTAAAATTACAGATGAAGGTGCCACTGTTTTCCCACCATTCTCATTGAAAACGTACTGGGAGTTCTCTGCCTTCAAGAATCCAACTGTGGGCGCTGAAGGTTCATGGTAA
Predicted protein sequences of Glyma19g43120
>Glyma19g43120.1   sequence type=predicted peptide   gene model=Glyma19g43120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERVAESERTLYPYVTGSSVVAIKYKDGILMAADMGGSYGSTLRYKSVERIKPIGKHSLLGASGEISDFQEILRYLDELILYDNMWDDGNSLGPKEVHNYLTRVMYNRRNKFNPLWNALVLGGVKNGQKYLGMVNMIGINFEDNHVATGLGNHLARPILRDEWHENLTFEEGVKLLEKCMRVLLYRDRSAVNKIQISKITDEGATVFPPFSLKTYWEFSAFKNPTVGAEGSW*

>Glyma19g43120.2   sequence type=predicted peptide   gene model=Glyma19g43120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLLSIEIILRIMSMGDILIGSYGSTLRYKSVERIKPIGKHSLLGASGEISDFQEILRYLDELILYDNMWDDGNSLGPKEVHNYLTRVMYNRRNKFNPLWNALVLGGVKNGQKYLGMVNMIGINFEDNHVATGLGNHLARPILRDEWHENLTFEEGVKLLEKCMRVLLYRDRSAVNKIQISKITDEGATVFPPFSLKTYWEFSAFKNPTVGAEGSW*






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