SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G05090 | AT | Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr3:1418573-1422723 REVERSE LENGTH=753 | SoyBase | E_val: 0 | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0010311 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root formation | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG0308 | KOG | Conserved WD40 repeat-containing protein | JGI | ISS | |
| PTHR19862 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR19862:SF5 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| PF11816 | PFAM | Domain of unknown function (DUF3337) | JGI | ISS | |
| UniRef100_G7L0S0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WD repeat-containing protein-like protein n=1 Tax=Medicago truncatula RepID=G7L0S0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NC61 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1NC61_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g43070 not represented in the dataset |
Glyma19g43070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g40440 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g241800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g43070.3 sequence type=transcript gene model=Glyma19g43070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATCTGGACGCCCATATTTACACACTCACGTTCGCTGTCCTCACCATTCTCTCTCTCTCTCTCTCCCAAACACTTTCTCTCTCTAAAGCTGAAACTTCGCACAGCAACAAGACAAGCACTCAGAGTGCTTCGAATTCGTCACTGATCACGTTTCTGCAATGCACCGCGTGGGTAGTGCAAGTAACGGAAACAATTCAACTCGCCCTCGTAAGGAGAAGAGATTAACCTATGTGTTGAATGATTCTGATGACTCAAAGCATTGTGCAGGCATAAATTGTCTGGCTCTACTTATGTCTGCAGCATCTGATGGGTCTGATTATCTGTTCACCGGAAGCCGTGATGGCAGGTTAAAACGATGGGCACTAGGGGTGGATAGAGCAACATGCTTGGCTACCTTTGAATCTCATGTCGATTGGGTTAATGATGCTGTTCTTGTTGGTGATAGTACACTTGTTTCTTGTTCCTCAGATACAACCCTTAAGACATGGAATGCCCTGTCCTTTGGAACTTGTACTAGGACTCTCCGGCAACACTCTGACTATGTTACTTGCCTTGCAGCAGCTGAAAAAAATAACAATACTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATCGAGGCTGCCCTTGCTCCCTCTAAGTGTAATGATGCTATGGTTGATGAATCTTCAAATGGTATCAATGGTTCTGGCAACTTACTACCATTGACATCCTTGCGTACTATTAACTCAAGCGACAATATGTCCATGCACACCACTCAAACTCAGGGATACGTTCCAATTTCTGCCAAAGGCCATAAAGATTCTGTTTATGCATTGACTATGAATGAAAGTGGAACAATTCTTGTCTCTGGTGGCACAGAAAAGGTTGTGCGTGTCTGGGACGCAAGATCAGGATCAAAGACTCTAAAGCTAAGAGGGCATACAGATAACATCAGGGCTCTGCTTCTGGATTCTAGTGGCAGATATTGTTTATCAGGATCTTCAGACTCTATGATAAGGCTTTGGGATATAGGTCAGCAGAGATGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTTGCCAGCACCCCAACATTTAGTCATGTTTATAGTGGAGGGAGAGACTTTTCATTATACTTGACAGATTTGCAAACTAGAGAGAGTAGTTTGCTTTGCACAGGCGAGCACCCTATTCTTCAATTGGCTTTGCATGATGATAGCATATGGGTTGCATCAACAGACTCTTCAGTTCATAGATGGCCAGCTGAAGGATGCGACCCTCAAAAGATTTTCCAGAGAGGCAATTCTTTTTTAGCTGGAAACTTGTCTTTTTCAAGAGCAAGAGTTTCACCAGAAGGATCTACCCCTGTTCCTGTATATAAAGAACCTACCTTAACTATCTTGGGTACACCTGCAATAGTACAACATGAAGTTTTGAGTAATAAGAGGCATGTGCTGACAAAGGATGCATCTGGTTCAGTGAAGCTGTGGGAGATTACCAAAGGCATTGTCGTTGAAGATTACGGAAAGGTTTCATTTGAGGAGAAAAAGGAAGAGCTATTTGAGATGGTTAGCATTCCTGCATGGTTCACAGTGGATACCAGGCTTGGAAGCTTGTCAGTCCATTTGGACACTCCCCAATGTTTTTCAGCAGAGATGTATTCAGCTGATCTTAACATTGTAGGCAAGCCTGAAGATGATAAGGTTAATTTGGCTCGAGAAACCCTTAAAGGGCTACTGGCTCATTGGTTGAGAAAACGAAAGCAAAGAATGGGATCCCCAGCTCCAGCTAATGGAGAACTATTATCTGGAAAGGAGACTGCTTCTAGAAGTAGTACCCATTCAAGAATTGAGGTTGATGGTAGTTCTGAGAATGATGCTATGGTTTATCCTCCATTTGAATTCTCAGTTACTTCCCCTCCTTCCATTATTACTGAGGGCACTCATGGAGGTCCATGGAGAAAAAAAATCACTGATTTAGATGGAACCAAGGATGAGAAAGACTTTCCTTGGTGGTGTCTGGACTGCGTCTTGAATAATCGGTTACCTCCCAGAGAAAATACAAAATGCAGTTTTTATTTGCAACCATGTGAAGGATCTTCAGTCCAGATCCTCACACAAGGGAAGCTAAGTGCCCCACGTATATTAAGAATTCACAAAGTTGTTAATTATGTAATAGAGAAGATGGTGCTTGACAAACCTTTGGACAGCTTAAGTGCTGAAGGTAGTATTGCCCCTGGTCTTACTGGGTCACAGTCACAGCATCAAGCAGTTGGGGATGGATCTTTTCGATCTGGATTTCAGCCATGGCAAAAGCTTAGACCTTCTATTGAAATATTGTGCTACAACCAGGTGCTGTCTCCTGAAATGAGCTTAGCCACAGTTCGAGCTTATGTATGGAAGAAATCAGATGACTTGGTTCTAAATTACAGACTAGTTCAAGGCAGGTGACTACAAATTGCATATGCATCAGAGATTGGAGGAAAGTGAGCTTTAACCATGTCTGAATAGTCATTATTGGTATCACAAGTAACTTTTGAATGATTTTGATGCATTGCATAACAATTTCTTTTGCTTTCTTACCCTTTACTTCAAGTTTTATCTCTGGAAGAAAAATAATTAGAAGGAA
>Glyma19g43070.2 sequence type=CDS gene model=Glyma19g43070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCACCGCGTGGGTAGTGCAAGTAACGGAAACAATTCAACTCGCCCTCGTAAGGAGAAGAGATTAACCTATGTGTTGAATGATTCTGATGACTCAAAGCATTGTGCAGGCATAAATTGTCTGGCTCTACTTATGTCTGCAGCATCTGATGGGTCTGATTATCTGTTCACCGGAAGCCGTGATGGCAGGTTAAAACGATGGGCACTAGGGGTGGATAGAGCAACATGCTTGGCTACCTTTGAATCTCATGTCGATTGGGTTAATGATGCTGTTCTTGTTGGTGATAGTACACTTGTTTCTTGTTCCTCAGATACAACCCTTAAGACATGGAATGCCCTGTCCTTTGGAACTTGTACTAGGACTCTCCGGCAACACTCTGACTATGTTACTTGCCTTGCAGCAGCTGAAAAAAATAACAATACTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATCGAGGCTGCCCTTGCTCCCTCTAAGTGTAATGATGCTATGGTTGATGAATCTTCAAATGGTATCAATGGTTCTGGCAACTTACTACCATTGACATCCTTGCGTACTATTAACTCAAGCGACAATATGTCCATGCACACCACTCAAACTCAGGGATACGTTCCAATTTCTGCCAAAGGCCATAAAGATTCTGTTTATGCATTGACTATGAATGAAAGTGGAACAATTCTTGTCTCTGGTGGCACAGAAAAGGTTGTGCGTGTCTGGGACGCAAGATCAGGATCAAAGACTCTAAAGCTAAGAGGGCATACAGATAACATCAGGGCTCTGCTTCTGGATTCTAGTGGCAGATATTGTTTATCAGGATCTTCAGACTCTATGATAAGGCTTTGGGATATAGGTCAGCAGAGATGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTTGCCAGCACCCCAACATTTAGTCATGTTTATAGTGGAGGGAGAGACTTTTCATTATACTTGACAGATTTGCAAACTAGAGAGAGTAGTTTGCTTTGCACAGGCGAGCACCCTATTCTTCAATTGGCTTTGCATGATGATAGCATATGGGTTGCATCAACAGACTCTTCAGTTCATAGATGGCCAGCTGAAGGATGCGACCCTCAAAAGATTTTCCAGAGAGGCAATTCTTTTTTAGCTGGAAACTTGTCTTTTTCAAGAGCAAGAGTTTCACCAGAAGGATCTACCCCTGTTCCTGTATATAAAGAACCTACCTTAACTATCTTGGGTACACCTGCAATAGTACAACATGAAGTTTTGAGTAATAAGAGGCATGTGCTGACAAAGGATGCATCTGGTTCAGTGAAGCTGTGGGAGATTACCAAAGGCATTGTCGTTGAAGATTACGGAAAGGTTTCATTTGAGGAGAAAAAGGAAGAGCTATTTGAGATGGTTAGCATTCCTGCATGGTTCACAGTGGATACCAGGCTTGGAAGCTTGTCAGTCCATTTGGACACTCCCCAATGTTTTTCAGCAGAGATGTATTCAGCTGATCTTAACATTGTAGGCAAGCCTGAAGATGATAAGGTTAATTTGGCTCGAGAAACCCTTAAAGGGCTACTGGCTCATTGGTTGAGAAAACGAAAGCAAAGAATGGGATCCCCAGCTCCAGCTAATGGAGAACTATTATCTGGAAAGGAGACTGCTTCTAGAAGTAGTACCCATTCAAGAATTGAGGTTGATGGTAGTTCTGAGAATGATGCTATGGTTTATCCTCCATTTGAATTCTCAGTTACTTCCCCTCCTTCCATTATTACTGAGGGCACTCATGGAGGTCCATGGAGAAAAAAAATCACTGATTTAGATGGAACCAAGGATGAGAAAGACTTTCCTTGGTGGTGTCTGGACTGCGTCTTGAATAATCGGTTACCTCCCAGAGAAAATACAAAATGCAGTTTTTATTTGCAACCATGTGAAGGATCTTCAGTCCAGATCCTCACACAAGGGAAGCTAAGTGCCCCACGTATATTAAGAATTCACAAAGTTGTTAATTATGTAATAGAGAAGATGGTGCTTGACAAACCTTTGGACAGCTTAAGTGCTGAAGGTAGTATTGCCCCTGGTCTTACTGGGTCACAGTCACAGCATCAAGCAGTTGGGGATGGATCTTTTCGATCTGGATTTCAGCCATGGCAAAAGCTTAGACCTTCTATTGAAATATTGTGCTACAACCAGGTGCTGTCTCCTGAAATGAGCTTAGCCACAGTTCGAGCTTATGTATGGAAGAAATCAGATGACTTGGTTCTAAATTACAGACTAGTTCAAGGCAGGTGA >Glyma19g43070.3 sequence type=CDS gene model=Glyma19g43070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCACCGCGTGGGTAGTGCAAGTAACGGAAACAATTCAACTCGCCCTCGTAAGGAGAAGAGATTAACCTATGTGTTGAATGATTCTGATGACTCAAAGCATTGTGCAGGCATAAATTGTCTGGCTCTACTTATGTCTGCAGCATCTGATGGGTCTGATTATCTGTTCACCGGAAGCCGTGATGGCAGGTTAAAACGATGGGCACTAGGGGTGGATAGAGCAACATGCTTGGCTACCTTTGAATCTCATGTCGATTGGGTTAATGATGCTGTTCTTGTTGGTGATAGTACACTTGTTTCTTGTTCCTCAGATACAACCCTTAAGACATGGAATGCCCTGTCCTTTGGAACTTGTACTAGGACTCTCCGGCAACACTCTGACTATGTTACTTGCCTTGCAGCAGCTGAAAAAAATAACAATACTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATCGAGGCTGCCCTTGCTCCCTCTAAGTGTAATGATGCTATGGTTGATGAATCTTCAAATGGTATCAATGGTTCTGGCAACTTACTACCATTGACATCCTTGCGTACTATTAACTCAAGCGACAATATGTCCATGCACACCACTCAAACTCAGGGATACGTTCCAATTTCTGCCAAAGGCCATAAAGATTCTGTTTATGCATTGACTATGAATGAAAGTGGAACAATTCTTGTCTCTGGTGGCACAGAAAAGGTTGTGCGTGTCTGGGACGCAAGATCAGGATCAAAGACTCTAAAGCTAAGAGGGCATACAGATAACATCAGGGCTCTGCTTCTGGATTCTAGTGGCAGATATTGTTTATCAGGATCTTCAGACTCTATGATAAGGCTTTGGGATATAGGTCAGCAGAGATGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTTGCCAGCACCCCAACATTTAGTCATGTTTATAGTGGAGGGAGAGACTTTTCATTATACTTGACAGATTTGCAAACTAGAGAGAGTAGTTTGCTTTGCACAGGCGAGCACCCTATTCTTCAATTGGCTTTGCATGATGATAGCATATGGGTTGCATCAACAGACTCTTCAGTTCATAGATGGCCAGCTGAAGGATGCGACCCTCAAAAGATTTTCCAGAGAGGCAATTCTTTTTTAGCTGGAAACTTGTCTTTTTCAAGAGCAAGAGTTTCACCAGAAGGATCTACCCCTGTTCCTGTATATAAAGAACCTACCTTAACTATCTTGGGTACACCTGCAATAGTACAACATGAAGTTTTGAGTAATAAGAGGCATGTGCTGACAAAGGATGCATCTGGTTCAGTGAAGCTGTGGGAGATTACCAAAGGCATTGTCGTTGAAGATTACGGAAAGGTTTCATTTGAGGAGAAAAAGGAAGAGCTATTTGAGATGGTTAGCATTCCTGCATGGTTCACAGTGGATACCAGGCTTGGAAGCTTGTCAGTCCATTTGGACACTCCCCAATGTTTTTCAGCAGAGATGTATTCAGCTGATCTTAACATTGTAGGCAAGCCTGAAGATGATAAGGTTAATTTGGCTCGAGAAACCCTTAAAGGGCTACTGGCTCATTGGTTGAGAAAACGAAAGCAAAGAATGGGATCCCCAGCTCCAGCTAATGGAGAACTATTATCTGGAAAGGAGACTGCTTCTAGAAGTAGTACCCATTCAAGAATTGAGGTTGATGGTAGTTCTGAGAATGATGCTATGGTTTATCCTCCATTTGAATTCTCAGTTACTTCCCCTCCTTCCATTATTACTGAGGGCACTCATGGAGGTCCATGGAGAAAAAAAATCACTGATTTAGATGGAACCAAGGATGAGAAAGACTTTCCTTGGTGGTGTCTGGACTGCGTCTTGAATAATCGGTTACCTCCCAGAGAAAATACAAAATGCAGTTTTTATTTGCAACCATGTGAAGGATCTTCAGTCCAGATCCTCACACAAGGGAAGCTAAGTGCCCCACGTATATTAAGAATTCACAAAGTTGTTAATTATGTAATAGAGAAGATGGTGCTTGACAAACCTTTGGACAGCTTAAGTGCTGAAGGTAGTATTGCCCCTGGTCTTACTGGGTCACAGTCACAGCATCAAGCAGTTGGGGATGGATCTTTTCGATCTGGATTTCAGCCATGGCAAAAGCTTAGACCTTCTATTGAAATATTGTGCTACAACCAGGTGCTGTCTCCTGAAATGAGCTTAGCCACAGTTCGAGCTTATGTATGGAAGAAATCAGATGACTTGGTTCTAAATTACAGACTAGTTCAAGGCAGGTGA
>Glyma19g43070.2 sequence type=predicted peptide gene model=Glyma19g43070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHRVGSASNGNNSTRPRKEKRLTYVLNDSDDSKHCAGINCLALLMSAASDGSDYLFTGSRDGRLKRWALGVDRATCLATFESHVDWVNDAVLVGDSTLVSCSSDTTLKTWNALSFGTCTRTLRQHSDYVTCLAAAEKNNNTVASGGLGGEVFIWDIEAALAPSKCNDAMVDESSNGINGSGNLLPLTSLRTINSSDNMSMHTTQTQGYVPISAKGHKDSVYALTMNESGTILVSGGTEKVVRVWDARSGSKTLKLRGHTDNIRALLLDSSGRYCLSGSSDSMIRLWDIGQQRCVHSYAVHTDSVWALASTPTFSHVYSGGRDFSLYLTDLQTRESSLLCTGEHPILQLALHDDSIWVASTDSSVHRWPAEGCDPQKIFQRGNSFLAGNLSFSRARVSPEGSTPVPVYKEPTLTILGTPAIVQHEVLSNKRHVLTKDASGSVKLWEITKGIVVEDYGKVSFEEKKEELFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLNIVGKPEDDKVNLARETLKGLLAHWLRKRKQRMGSPAPANGELLSGKETASRSSTHSRIEVDGSSENDAMVYPPFEFSVTSPPSIITEGTHGGPWRKKITDLDGTKDEKDFPWWCLDCVLNNRLPPRENTKCSFYLQPCEGSSVQILTQGKLSAPRILRIHKVVNYVIEKMVLDKPLDSLSAEGSIAPGLTGSQSQHQAVGDGSFRSGFQPWQKLRPSIEILCYNQVLSPEMSLATVRAYVWKKSDDLVLNYRLVQGR* >Glyma19g43070.3 sequence type=predicted peptide gene model=Glyma19g43070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHRVGSASNGNNSTRPRKEKRLTYVLNDSDDSKHCAGINCLALLMSAASDGSDYLFTGSRDGRLKRWALGVDRATCLATFESHVDWVNDAVLVGDSTLVSCSSDTTLKTWNALSFGTCTRTLRQHSDYVTCLAAAEKNNNTVASGGLGGEVFIWDIEAALAPSKCNDAMVDESSNGINGSGNLLPLTSLRTINSSDNMSMHTTQTQGYVPISAKGHKDSVYALTMNESGTILVSGGTEKVVRVWDARSGSKTLKLRGHTDNIRALLLDSSGRYCLSGSSDSMIRLWDIGQQRCVHSYAVHTDSVWALASTPTFSHVYSGGRDFSLYLTDLQTRESSLLCTGEHPILQLALHDDSIWVASTDSSVHRWPAEGCDPQKIFQRGNSFLAGNLSFSRARVSPEGSTPVPVYKEPTLTILGTPAIVQHEVLSNKRHVLTKDASGSVKLWEITKGIVVEDYGKVSFEEKKEELFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLNIVGKPEDDKVNLARETLKGLLAHWLRKRKQRMGSPAPANGELLSGKETASRSSTHSRIEVDGSSENDAMVYPPFEFSVTSPPSIITEGTHGGPWRKKITDLDGTKDEKDFPWWCLDCVLNNRLPPRENTKCSFYLQPCEGSSVQILTQGKLSAPRILRIHKVVNYVIEKMVLDKPLDSLSAEGSIAPGLTGSQSQHQAVGDGSFRSGFQPWQKLRPSIEILCYNQVLSPEMSLATVRAYVWKKSDDLVLNYRLVQGR*
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