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Report for Sequence Feature Glyma19g43040

Feature Type:gene_model
Chromosome:Gm19
Start:48828007
stop:48828525
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g43040
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G22560AT Annotation by Michelle Graham. TAIR10: Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr3:7998915-7999442 REVERSE LENGTH=175 SoyBaseE_val: 2.00E-54ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0008080GO-mf Annotation by Michelle Graham. GO Molecular Function: N-acetyltransferase activity SoyBaseN/AISS
KOG3139 KOG N-acetyltransferase JGI ISS
PF00583PFAM Acetyltransferase (GNAT) family JGI ISS
UniRef100_G7L0S4UniRef Annotation by Michelle Graham. Most informative UniRef hit: N-acetyltransferase, putative n=1 Tax=Medicago truncatula RepID=G7L0S4_MEDTR SoyBaseE_val: 3.00E-70ISS
UniRef100_I1NC58UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NC58_SOYBN SoyBaseE_val: 9.00E-116ISS

Expression Patterns of Glyma19g43040
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g43040 not represented in the dataset
Glyma19g43040 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g43040 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g241600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g43040
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g43040
>Glyma19g43040.1   sequence type=CDS   gene model=Glyma19g43040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTTGTCGCGAATCACCTTGCGGCCTTTGAAGCTGAGCGACGTAGATGATTTCATGGTCGTAGCTGGTGATGATAGAGTGACTCGCTACACCCGATGGAACACTTTTGTTTCGAGGGAGCAAGCGTTGACTTTCATTCGAGATCATCAACATCCATGGACTCGCGCCATATGCGTTGACGATGTAACCATTGGATATGTGTCGGTGTCTCCTGGATCGGGTGATGACAGGTGTAGGGCTGAGATTGGCTGTTACATAGCTACCGATTACTGGGGCCAAGGGATTGCCACCGAAGCAACGAAGATTGCTGCGTCACAAGTCTTCAAGGATCTCCCTGGCTTGGTGAGGTTACAAGCTTTTGTTGCTGTAGAGAACAAAGCGTCCCAAAGGGTGTTGGAAAAAGCAGGGTTTCTTAGGGAGGCCATACTCAAAAGGTATGCGTATGTCAAGGGAATGATTAAGGATGTCGCTATTTTTAGTCTTGTGTTACAGGATACCCATTCTTCTTCATTGTAA
Predicted protein sequences of Glyma19g43040
>Glyma19g43040.1   sequence type=predicted peptide   gene model=Glyma19g43040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLSRITLRPLKLSDVDDFMVVAGDDRVTRYTRWNTFVSREQALTFIRDHQHPWTRAICVDDVTIGYVSVSPGSGDDRCRAEIGCYIATDYWGQGIATEATKIAASQVFKDLPGLVRLQAFVAVENKASQRVLEKAGFLREAILKRYAYVKGMIKDVAIFSLVLQDTHSSSL*






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