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Report for Sequence Feature Glyma19g43030

Feature Type:gene_model
Chromosome:Gm19
Start:48823140
stop:48823931
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g43030
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G22560AT Annotation by Michelle Graham. TAIR10: Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr3:7998915-7999442 REVERSE LENGTH=175 SoyBaseE_val: 4.00E-65ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0008080GO-mf Annotation by Michelle Graham. GO Molecular Function: N-acetyltransferase activity SoyBaseN/AISS
PF00583PFAM Acetyltransferase (GNAT) family JGI ISS
UniRef100_C6T3M3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T3M3_SOYBN SoyBaseE_val: 1.00E-126ISS
UniRef100_G7L0S4UniRef Annotation by Michelle Graham. Most informative UniRef hit: N-acetyltransferase, putative n=1 Tax=Medicago truncatula RepID=G7L0S4_MEDTR SoyBaseE_val: 4.00E-101ISS

Expression Patterns of Glyma19g43030
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g43030 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g241500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g43030
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g43030
>Glyma19g43030.1   sequence type=CDS   gene model=Glyma19g43030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGGGTGGATCTCTCCAGGATTAGTCTCCGACCATTCAAGATGAGTGATGTTGACGATTTCTTGATATGGGCAGGGGATGATCAAGTGACTCGAAACCTCCGATGGAAGACGTGTGGTTCAAGGGAAGAGGCTCTGGCCTTCATAAGGGATGTTTGCATACCTCACCCATGGCGTAGATCAATCTGCCTTGATGACCGTTCCATCGGCTTTGTTTCGGTGTATCCTTGGTCGGGCGATGAAAGGTGCAAGGCCGACATAGGCTATGCTATTGGGACCAACTACTGGGGCCAAGGGATAGCTACCAAAGCACTCATGACTGCAGTGCCTCAAGTCTTCAAGGACTTTAACGAATTGCTAAGGTTGCAGGCTTTTGTTGATGTTGAGAACAAGGCTTCTCAGAGGGTGTTGGAAAAGGCTGGGTTCCTTAGAGAGGGTGTCCTCAGAAAGTACACTTATCTTAAGGGGGTTGTTAAGGATTTGGTTTTGTATAGTTTTTTGTCAACGGATGAAATTACTTCTTGTGACTAG
Predicted protein sequences of Glyma19g43030
>Glyma19g43030.1   sequence type=predicted peptide   gene model=Glyma19g43030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARVDLSRISLRPFKMSDVDDFLIWAGDDQVTRNLRWKTCGSREEALAFIRDVCIPHPWRRSICLDDRSIGFVSVYPWSGDERCKADIGYAIGTNYWGQGIATKALMTAVPQVFKDFNELLRLQAFVDVENKASQRVLEKAGFLREGVLRKYTYLKGVVKDLVLYSFLSTDEITSCD*






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