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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G05040 | AT | Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr3:1401479-1408095 REVERSE LENGTH=1202 | SoyBase | E_val: 0 | ISS |
| GO:0009910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development | SoyBase | N/A | ISS |
| GO:0009944 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0035281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pre-miRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0048367 | GO-bp | Annotation by Michelle Graham. GO Biological Process: shoot development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005635 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR11223 | Panther | CHROMOSOME REGION MAINTENANCE PROTEIN | JGI | ISS | |
| PTHR11223:SF3 | Panther | CHROMOSOME REGION MAINTENANCE PROTEIN 5/EXPORTIN 5 | JGI | ISS | |
| PF08389 | PFAM | Exportin 1-like protein | JGI | ISS | |
| UniRef100_G7L0R1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Exportin-5 n=1 Tax=Medicago truncatula RepID=G7L0R1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NC50 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NC50_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g42930 not represented in the dataset |
Glyma19g42930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g40320 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g240700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g42930.1 sequence type=CDS gene model=Glyma19g42930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGACAGTGTTAGTAGCAGCAACACGAGTGCCACCAATGTGGCACAAGCTATACACACTGCCCTTGACTGGGCCTCTTCTCCTGACGCTCGACAAAACGCCGTTGCTTTTCTCGATTCCATCAAGAATGGTGATATACGGGTATTAGCAAACACATCATTCCTTCTGGTGAAAAAGAACTGGTCGTCTGAAATCCGGTTACATGCCTTTAAAATGCTGCAGCATTTGGTGCGCTTACGATGGGAGGAATTAGGCCCTGCAGAGCACAAGAACTTTGCAAAGCTTTCTGTTGATTTAATGTCTGAGATTTCCAATCCTTGTGAAAATTGGGCTCTCAAAAGCCAGACAGCTGCCCTTGTTGCTGAGGTAGTTAGAAGAGAGGGTCTTAATTTATGGCAAGAAATGCTTCCATCTTTGATTTCTCTATCCAGCAATGGTCCGATAGAAGCGGAGTTGGTTGCAATGATGCTGCGGTGGCTTCCTGAAGACATTACAGTTCACAATGAAGACTTAGAAGGTGATCGGCGAAGGCTACTTTTGCGTGGGCTAACTCAATCATTGCCCGAAATTTTGCCACTATTATACACTTTACTAGAAAGGCACTTTACAGCTGCAATGAATGAAGCTGGTAGGAAACAGATGGATATTGCCAAACAGCATGCTGCTACTGTAACAGCTACTCTAAATGCTATGAATGCATATGCTGAGTGGGCTCCATTGTCAGATTTTGCTAAGTCTGGCATCATTCATGGTTGTGGTGTACTACTATCTGCACCAGATTTTCGTCTTCATGCTTCGGAGTTTTTCAAACTTGTCTCTCCAAGGAAGAGGCCTATTGATGCATCTGCCTCTGAATTTGACCAAGCTATGAGCAGCATCTTTCAAATATTGATGAATGTATCTAGAGAATTTTTGCATAGATCTGGTTCAGGTCCTGGGTCCATAGATGAGGGCGAATATGAATTTGCTGAATTTATATGTGAAAGTATGGTGTCACTGGGTTCTTATAACTTGCAAAGTATTGCTGGTGATAGCACCATACTTCCACTTTACCTTGAACAGATGCTGAGATTTTTCCAACATTTCAAGTTTGCTATTCATTTTCAATCCATGCACTTCTGGCTGGTGCTAATGAGGGATTTGATGTCAAAGCCAAAAAGTTCCACACATTCAGCTGCTGACAGTTCAGCTGTTAGTAGCACAGGTTCTGGAGAAGTTGAAAATGCCAAGAAAAAGACTCTAAGCTTTGTGAGTGATGATTTTTGTGGTGCAATTTTGGATACATCTTTCCCTCGCATGCTCAAGAGACAAAAGATGCTGCATGAGACTGCCATTTCTTTAGGGGCATTGGAGTTGTGGAGTGATGATTTTGAGGGCAAGGGAACATTCAGCCAGTATCGTTCTAGACTGTTGGAGTTGATTAGGCTTGTTTCTTCTTACAAACCCCTGATAGCTGCTACTAAAGTTTCTGAAAAAATTGATACAATCATCAAAGATCTCTTGCTTTCACCGGCACCAACTCAGGACTTAGCTGTGATGGAAAGCATGCAATTGGCTTTAGAGAATGTTGTAAATGCAGCTTTTGATGGATCAAATGACTTTACCAAGACAAATGCTGAAGTCCAGTTTGCATTATGTAGAACGTTTGAAGGTTTACTTCAACAATTTATTTCCTTAAAATGGACGGAGCCTGCACTTGTTGAAGTACTTGTGCACTATTTGGATGCTATGGGCCCCTTTTTGAAGTATTTCCCAGATGCAGTTGGCAGTGTTATTAATAAATTATTTGAACTACTAACATCTCTTCCCCTTGTAATCAAGGATATGTCAATGCATAATGCACGGCATGCAAGGCTGCAGACCTGTACATCATTTATTCGGATAGCGAAAACTGCTGACAAAAGCATCTTGCCTCATATGAAGGGTATTGCTGATACAATGGGATGTTTGCAAAGGGAGGGTCGTTTGCTTCAGGGAGAGCATAATCTTTTAGGCGAAGCATTTCTTGTTATGTCTTCTTCTGCTGGGATCCAACAGCAACAAGATGTTTTAAGGTGGTTACTAGAACCTTTAAGCATTCAGTGGACACAATTGGAGTGGCAGGATAAGTATTTGTCAGGTCCACACGGTTTGGTTCAGTTGTGCTCAGATGTGCCTGTTATGTGGTCAATTTTTCATACAGTGACATTCTTTGAGAGGGCACTTAAGAGGAGTGGATTGAAGAAAGCCAATTGGAATTCAGAAAACAGCTCAACACCAAATTCAATTCCTTTAAATCCAATGGCCTCTCACATATCATGGATGGTGACTCCTCTCTTGAAACTACTTCGCTGTATACATTCCCTTTGGTCTCCATCTGTAAGTCAAGCTTTACCTGGTGAGGTCAGAGCTGCAATGGTCATGGGTGATGTTGAGAGGTTCAGTCTTCTTGGAGAAGGGAACTCTAAATTACCAAAGGGTGTCACAGATGGATCTAAGATTGACATGAATAAAGAAGGATACGCTGAACCCAATGAATCAGATATTCGAAATTGGTTTAAAGGCATCAGAGACAGTGGATATAATGTATTGGGCTTGTCAACAACCGTTGGGGATTCGTTTTTCAAATATTTGGATGTGCACTCTGTTGCTGTTGCCCTAATGGAGAATATACAGTCAATGGAGTTCAGGCATATAAGACAGCTTGTTCATTCCACTTTGATTCCTTTGGTTAAAAATTGTCCTTTGGATATGTGGGAGATTTGGCTGGAAAAGCTTCTACACCCATTTTTTGTCCATGCTCAGCAAGCACTTAGCTGTTCATGGTCTAGTCTTCTACAAGATGGTAGAGCAAAGGTTCCAGATGCTCATGGCATTCTTAGTGGATCAGACTTGAAAGTGGAAGTGATGGAGGAAACAATTCTGAGGGATCTCACGCGTGAGATGTGTTCACTCCTCTCTGCCATAGCTTCTCCTCCCCTTAATACTGGAATTCCTTCTTTGGAACAGTCTGGGCATGTTTGTCGATTAGATATGTCTTCTCTAAAAAACTTGGATACAGTTGCATCATGCTCTATGGTTGGTTTCCTTCTAAAGCATGAATGTCTGGTCCTTCCAACACTACAAATGTGTTTAGAAGCTTTTACATGGACGGATGGTGAAGCCGTGACTAAAATTTCTTCATATTGCTCTGCATTGGTAGTTCTTGCAATAGTAACAAATCATGCAGAACTCGTTGAATATGTTTCTAGAGATCTTTTTACATCCATTATTAAAGGTTTAGCCCTTGAATCAAATGCAATAATCAGTGCTGATCTAGTTGGCATTTGTCGCGAAATATTTGTTTATCTTTGTGATAGACACCCAGCTCCCAGGCAGGTTTTAATGTCTCTCCCCAATATTACCACTCATGATTTAGTTGCCTTTGAGGAATCCTTAACGAAAACATTCAGTCCAAAGGAACAAAAGCAGCTTACGAGAAGCTTGCTTCAATTAGCATCTGGTAACAAATTGAAAGCACTTGCAGCACAGAAAACTGTGAATATCATTACAAATGTTTCAATGAGACCACGCCCAGCCAATGCTCCCGAGTCCAAAGTTGATGATGGTGATGCTGTGGGGTTGGCAGCCATCATGTGA
>Glyma19g42930.1 sequence type=predicted peptide gene model=Glyma19g42930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDSVSSSNTSATNVAQAIHTALDWASSPDARQNAVAFLDSIKNGDIRVLANTSFLLVKKNWSSEIRLHAFKMLQHLVRLRWEELGPAEHKNFAKLSVDLMSEISNPCENWALKSQTAALVAEVVRREGLNLWQEMLPSLISLSSNGPIEAELVAMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYTLLERHFTAAMNEAGRKQMDIAKQHAATVTATLNAMNAYAEWAPLSDFAKSGIIHGCGVLLSAPDFRLHASEFFKLVSPRKRPIDASASEFDQAMSSIFQILMNVSREFLHRSGSGPGSIDEGEYEFAEFICESMVSLGSYNLQSIAGDSTILPLYLEQMLRFFQHFKFAIHFQSMHFWLVLMRDLMSKPKSSTHSAADSSAVSSTGSGEVENAKKKTLSFVSDDFCGAILDTSFPRMLKRQKMLHETAISLGALELWSDDFEGKGTFSQYRSRLLELIRLVSSYKPLIAATKVSEKIDTIIKDLLLSPAPTQDLAVMESMQLALENVVNAAFDGSNDFTKTNAEVQFALCRTFEGLLQQFISLKWTEPALVEVLVHYLDAMGPFLKYFPDAVGSVINKLFELLTSLPLVIKDMSMHNARHARLQTCTSFIRIAKTADKSILPHMKGIADTMGCLQREGRLLQGEHNLLGEAFLVMSSSAGIQQQQDVLRWLLEPLSIQWTQLEWQDKYLSGPHGLVQLCSDVPVMWSIFHTVTFFERALKRSGLKKANWNSENSSTPNSIPLNPMASHISWMVTPLLKLLRCIHSLWSPSVSQALPGEVRAAMVMGDVERFSLLGEGNSKLPKGVTDGSKIDMNKEGYAEPNESDIRNWFKGIRDSGYNVLGLSTTVGDSFFKYLDVHSVAVALMENIQSMEFRHIRQLVHSTLIPLVKNCPLDMWEIWLEKLLHPFFVHAQQALSCSWSSLLQDGRAKVPDAHGILSGSDLKVEVMEETILRDLTREMCSLLSAIASPPLNTGIPSLEQSGHVCRLDMSSLKNLDTVASCSMVGFLLKHECLVLPTLQMCLEAFTWTDGEAVTKISSYCSALVVLAIVTNHAELVEYVSRDLFTSIIKGLALESNAIISADLVGICREIFVYLCDRHPAPRQVLMSLPNITTHDLVAFEESLTKTFSPKEQKQLTRSLLQLASGNKLKALAAQKTVNIITNVSMRPRPANAPESKVDDGDAVGLAAIM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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