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Report for Sequence Feature Glyma19g42890

Feature Type:gene_model
Chromosome:Gm19
Start:48706603
stop:48710141
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g42890
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08830AT Annotation by Michelle Graham. TAIR10: copper/zinc superoxide dismutase 1 | chr1:2827700-2829053 FORWARD LENGTH=152 SoyBaseE_val: 5.00E-87ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0010039GO-bp Annotation by Michelle Graham. GO Biological Process: response to iron ion SoyBaseN/AISS
GO:0010193GO-bp Annotation by Michelle Graham. GO Biological Process: response to ozone SoyBaseN/AISS
GO:0019430GO-bp Annotation by Michelle Graham. GO Biological Process: removal of superoxide radicals SoyBaseN/AISS
GO:0034599GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to oxidative stress SoyBaseN/AISS
GO:0035195GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by miRNA SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0046688GO-bp Annotation by Michelle Graham. GO Biological Process: response to copper ion SoyBaseN/AISS
GO:0071280GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to copper ion SoyBaseN/AISS
GO:0071329GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to sucrose stimulus SoyBaseN/AISS
GO:0071457GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to ozone SoyBaseN/AISS
GO:0071472GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to salt stress SoyBaseN/AISS
GO:0071484GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to light intensity SoyBaseN/AISS
GO:0071493GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to UV-B SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0004784GO-mf Annotation by Michelle Graham. GO Molecular Function: superoxide dismutase activity SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG0441 KOG Cu2+/Zn2+ superoxide dismutase SOD1 JGI ISS
PTHR10003Panther CU/ZN SUPEROXIDE DISMUTASE JGI ISS
PF00080PFAM Copper/zinc superoxide dismutase (SODC) JGI ISS
UniRef100_Q7M1R5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Superoxide dismutase [Cu-Zn] n=2 Tax=Glycine max RepID=SODC_SOYBN SoyBaseE_val: 4.00E-102ISS
UniRef100_Q7M1R5UniRef Annotation by Michelle Graham. Best UniRef hit: Superoxide dismutase [Cu-Zn] n=2 Tax=Glycine max RepID=SODC_SOYBN SoyBaseE_val: 4.00E-102ISS

Expression Patterns of Glyma19g42890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g42890
ParalogEvidenceComments
Glyma03g40280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g42890 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g240400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g42890
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g42890
>Glyma19g42890.2   sequence type=transcript   gene model=Glyma19g42890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGAAAGCGATGAGGTGGCAAATGGTTAGTAGAAATGCTAATAGTTGTGGAGGACCTCGTGGCGTGCTAACACACACGCCTCACTCGCTATAAATAAAAAAACAATAAACCCACTCTGCTTCCCATCATCCGTCTTCTAGACTCTTCTTTTTCTCTAAGTCTAAGGGGTGCCCTGAGATCACTTTGAGCAATGGTGAAGGCTGTGGCAGTTCTTGGCAGCAGCGAGGGTGTCACTGGAACTATTTTCTTCACTCAGGAGGGAAATGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGCTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTGTCAACTGGAGCGCATTTCAATCCTAATAACAACGAGCACGGTGCCCCTGAGGACGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACCGTTAGCTTCAGTATTACCGACAGTCAGATTCCTCTCACTGGACCAAACTCCATCATAGGAAGGGCTGTTGTTGTCCATGCTGATTCTGATGACCTTGGAAAAGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAAACTAATCACATGAGGTTGGAACCGTGCTTTAGAATTGTGGAATAAAGTAGCACCCATTTAAACCCGTTTGGTTAGGTCCGGTCTGTGTACGGCTGAATTCTGTGTTTTGCTTGTATCGTATCTGAGGGTTATATGTAGACACTTGATGCTTAATCAAATTGTTACTTTGCCTGAAGTATGTGTTAGTGGTTATCCTTATTTCTTGTATTAGTTTGTGCTTGAAATATGATATGATACTCGAGAAATGTGAGATTTTTCTGATGACTTGAGGCTATGATTAGATTGGTAACAGAGAATGAAATGAAATGAATTGGAAAATAATGAGATGGAATGGAATAAAAATGTCATTTTATTGTTTGGATATTTTATAATAGAACCAAGCAAAGATTTCATAGTTTGGAG

>Glyma19g42890.3   sequence type=transcript   gene model=Glyma19g42890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCCGTCTTCTAGACTCTTCTTTTTCTCTAAGTCTAAGGGGTGCCCTGAGATCACTTTGAGCAATGGTGAAGGCTGTGGCAGTTCTTGGCAGCAGCGAGGGTGTCACTGGAACTATTTTCTTCACTCAGGAGGGAAATGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGCTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTGTCAACTGGAGCGCATTTCAATCCTAATAACAACGAGCACGGTGCCCCTGAGGACGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAAACTAATCACATGAGGTTGGAACCGTGCTTTAGAATTGTGGAATAAAGTAGCACCCATTTAAACCCGTTTGGTTAGGTCCGGTCTGTGTACGGCTGAATTCTGTGTTTTGCTTGTATCGTATCTGAGGGTTATATGTAGACACTTGATGCTTAATCAAATTGTTACTTTGCCTGAAGTATGTGTTAGTGGTTATCCTTATTTCTTGTATTAGTTTGTGCTTGAAATATGATATGATACTCGAGAAATGTGAGATTTTTCTGATGACTTGAGGCTATGATTAGATTGGTAACAGAGAATGAAATGAAATGAATTGGAAAATAATGAGATGGAATGGAATAAAAATGTCATTTTATTGTTTGGAT

>Glyma19g42890.4   sequence type=transcript   gene model=Glyma19g42890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGAAAGCGATGAGGTGGCAAATGGTTAGTAGAAATGCTAATAGTTGTGGAGGACCTCGTGGCGTGCTAACACACACGCCTCACTCGCTATAAATAAAAAAACAATAAACCCACTCTGCTTCCCATCATCCGTCTTCTAGACTCTTCTTTTTCTCTAAGTCTAAGGGGTGCCCTGAGATCACTTTGAGCAATGGTGAAGGCTGTGGCAGTTCTTGGCAGCAGCGAGGGTGTCACTGGAACTATTTTCTTCACTCAGGAGGGAAATGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGCTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTGTCAACTGGAGCGCATTTCAATCCTAATAACAACGAGCACGGTGCCCCTGAGGACGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACGTCTGATCTATTATTTTTTCTTCTGTTTCATCTATTTGATTTGTTAATGTCGGTGATGATGGTACGTCTGATCTATTATTTTTTCTTCTGTTTCATCTATTTGATTAGTGATTGATTCCAACTAATCTGAAAAGATCAAAAAGCAACATATTTATCTGATTCCAAATTTCAAATTTCTGATTATTTTTACAATCCCAGTGTGAAAAGTAATATATATTTTTTGAATAAGCAATAAAAGTAATCTTTTTAGCATTACAAAGAAGTAATTGATAGATGACAGATAATCTGGAGGTTCTACAAGAAACTTTTCCATATTTTGAAATGATGTTTGGTAATTGAGATTACTTGCGTTCTATTTTGGTGATAGTTCATCTTTGAAAGAACTTGTCTATTTTGCCTATCATACCACATGCTTGTTTGGTCTTTATTTTAAAATGGTTTTATCTCATTGTGTAACTCAAGGTACCGTTAGCTTCAGTATTACCGACAGTCAGGTATGTTACTCATTTCCAAATCAAATCTCTGTTGAATTCTTCTAGGTTGACACCAAGACTTGGGAAGTTTCAATTTTTAACTAGTAAATTTGTACAGATTCCTCTCACTGGACCAAACTCCATCATAGGAAGGGCTGTTGTTGTCCATGCTGATTCTGATGACCTTGGAAAAGGTATCCACTAATCTGTTTTTATTCCTTGCTATCAGAGTCATTGGACATCCACTTATGATATTCTGTCTTAATTCTGTTTGGATTTGGATCCTTTCATGTTAGTAAAGAACATGAGATTGCCTTGTAAGGAGAGAAAATTATAGTATCTCGCCATGATTTACGTAGGGCCCATTAACTTAAATGTGTCTTCCTCTCGTTCATTTTCCTTGCTAGCATAAGAGGATCTTGATC

>Glyma19g42890.5   sequence type=transcript   gene model=Glyma19g42890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGAAAGCGATGAGGTGGCAAATGGTTAGTAGAAATGCTAATAGTTGTGGAGGACCTCGTGGCGTGCTAACACACACGCCTCACTCGCTATAAATAAAAAAACAATAAACCCACTCTGCTTCCCATCATCCGTCTTCTAGACTCTTCTTTTTCTCTAAGTCTAAGGGGTGCCCTGAGATCACTTTGAGCAATGGTGAAGGCTGTGGCAGTTCTTGGCAGCAGCGAGGGTGTCACTGGAACTATTTTCTTCACTCAGGAGGGAAATGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGCTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTGTCAACTGGAGCGCATTTCAATCCTAATAACAACGAGCACGGTGCCCCTGAGGACGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACGTCTGATCTATTATTTTTTCTTCTGTTTCATCTATTTGATTTGTTAATGTCGGTGATGATGGTACGTCTGATCTATTATTTTTTCTTCTGTTTCATCTATTTGATTAGTGATTGATTCCAACTAATCTGAAAAGATCAAAAAGCAACATATTTATCTGATTCCAAATTTCAAATTTCTGATTATTTTTACAATCCCAGTGTGAAAAGTAATATATATTTTTTGAATAAGCAATAAAAGTAATCTTTTTAGCATTACAAAGAAGTAATTGATAGATGACAGATAATCTGGAGGTTCTACAAGAAACTTTTCCATATTTTGAAATGATGTTTGGTAATTGAGATTACTTGCGTTCTATTTTGGTGATAGTTCATCTTTGAAAGAACTTGTCTATTTTGCCTATCATACCACATGCTTGTTTGGTCTTTATTTTAAAATGGTTTTATCTCATTGTGTAACTCAAGGTACCGTTAGCTTCAGTATTACCGACAGTCAGGTATGTTACTCATTTCCAAATCAAATCTCTGTTGAATTCTTCTAGGTTGACACCAAGACTTGGGAAGTTTCAATTTTTAACTAGTAAATTTGTACAGATTCCTCTCACTGGACCAAACTCCATCATAGGAAGGGCTGTTGTTGTCCATGCTGATTCTGATGACCTTGGAAAAGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAAACTAATCACATGAGGTTGGAACCGTGCTTTAGAATTGTGGAATAAAGTAGCACCCATTTAAACCCGTTTGGTTAGGTCCGGTCTGTGTACGGCTGAATTCTGTGTTTTGCTTGTATCGTATCTGAGGGTTATATGTAGACACTTGATGCTTAATCAAATTGTTACTTTGCCTGAAGTATGTGTTAGTGGTTATCCTTATTTCTTGTATTAGTTTGTGCTTGAAATATGATATGATACTCGAGAAATGTGAGATTTTTCTGATGACTTGAGGCTATGATTAGATTGGTAACAGAGAATGAAATGAAATGAATTGGAAAATAATGAGATGGAATGGAATAAAAATGTCATTTTATTGTTTGGATATTTTATAATAGAACCAAGCAAAGATTTCATAGTTTGGAG
Coding sequences of Glyma19g42890
>Glyma19g42890.1   sequence type=CDS   gene model=Glyma19g42890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAGGCTGTGGCAGTTCTTGGCAGCAGCGAGGGTGTCACTGGAACTATTTTCTTCACTCAGGAGGGAAATGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGCTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTGTCAACTGGAGCGCATTTCAATCCTAATAACAACGAGCACGGTGCCCCTGAGGACGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACCGTTAGCTTCAGTATTACCGACAGTCAGATTCCTCTCACTGGACCAAACTCCATCATAGGAAGGGCTGTTGTTGTCCATGCTGATTCTGATGACCTTGGAAAAGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAA

>Glyma19g42890.2   sequence type=CDS   gene model=Glyma19g42890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAGGCTGTGGCAGTTCTTGGCAGCAGCGAGGGTGTCACTGGAACTATTTTCTTCACTCAGGAGGGAAATGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGCTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTGTCAACTGGAGCGCATTTCAATCCTAATAACAACGAGCACGGTGCCCCTGAGGACGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACCGTTAGCTTCAGTATTACCGACAGTCAGATTCCTCTCACTGGACCAAACTCCATCATAGGAAGGGCTGTTGTTGTCCATGCTGATTCTGATGACCTTGGAAAAGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAA

>Glyma19g42890.3   sequence type=CDS   gene model=Glyma19g42890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAGGCTGTGGCAGTTCTTGGCAGCAGCGAGGGTGTCACTGGAACTATTTTCTTCACTCAGGAGGGAAATGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGCTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTGTCAACTGGAGCGCATTTCAATCCTAATAACAACGAGCACGGTGCCCCTGAGGACGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAA

>Glyma19g42890.4   sequence type=CDS   gene model=Glyma19g42890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAGGCTGTGGCAGTTCTTGGCAGCAGCGAGGGTGTCACTGGAACTATTTTCTTCACTCAGGAGGGAAATGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGCTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTGTCAACTGGAGCGCATTTCAATCCTAATAACAACGAGCACGGTGCCCCTGAGGACGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACGTCTGATCTATTATTTTTTCTTCTGTTTCATCTATTTGATTTGTTAATGTCGGTGATGATGGTACGTCTGATCTATTATTTTTTCTTCTGTTTCATCTATTTGATTAGTGATTGA

>Glyma19g42890.5   sequence type=CDS   gene model=Glyma19g42890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAGGCTGTGGCAGTTCTTGGCAGCAGCGAGGGTGTCACTGGAACTATTTTCTTCACTCAGGAGGGAAATGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGCTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTGTCAACTGGAGCGCATTTCAATCCTAATAACAACGAGCACGGTGCCCCTGAGGACGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACGTCTGATCTATTATTTTTTCTTCTGTTTCATCTATTTGATTTGTTAATGTCGGTGATGATGGTACGTCTGATCTATTATTTTTTCTTCTGTTTCATCTATTTGATTAGTGATTGA
Predicted protein sequences of Glyma19g42890
>Glyma19g42890.1   sequence type=predicted peptide   gene model=Glyma19g42890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTVSFSITDSQIPLTGPNSIIGRAVVVHADSDDLGKGGHELSKTTGNAGGRVACGIIGLQG*

>Glyma19g42890.2   sequence type=predicted peptide   gene model=Glyma19g42890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTVSFSITDSQIPLTGPNSIIGRAVVVHADSDDLGKGGHELSKTTGNAGGRVACGIIGLQG*

>Glyma19g42890.3   sequence type=predicted peptide   gene model=Glyma19g42890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGGHELSKTTGNAGGRVACGIIGLQG*

>Glyma19g42890.4   sequence type=predicted peptide   gene model=Glyma19g42890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTSDLLFFLLFHLFDLLMSVMMVRLIYYFFFCFIYLISD*

>Glyma19g42890.5   sequence type=predicted peptide   gene model=Glyma19g42890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTSDLLFFLLFHLFDLLMSVMMVRLIYYFFFCFIYLISD*






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