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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G05010 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function, transmembrane-40 | chr3:1389603-1391462 FORWARD LENGTH=300 | SoyBase | E_val: 2.00E-128 | ISS |
| GO:0002237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin | SoyBase | N/A | ISS |
| GO:0010015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root morphogenesis | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG4536 | KOG | Predicted membrane protein | JGI | ISS | |
| PTHR15876 | Panther | TPRA-40 RELATED | JGI | ISS | |
| PTHR15876:SF9 | Panther | JGI | ISS | ||
| PF10160 | PFAM | Predicted membrane protein | JGI | ISS | |
| UniRef100_I1NC44 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NC44_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q94BV6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT5g27210/T21B4_120 n=1 Tax=Arabidopsis thaliana RepID=Q94BV6_ARATH | SoyBase | E_val: 8.00E-113 | ISS |
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Glyma19g42870 not represented in the dataset |
Glyma19g42870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g40260 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g240200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g42870.2 sequence type=transcript gene model=Glyma19g42870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATTCAGTGGACAAAGAAGTTAGAACTAGTGGGCCAACGCGTAATCAAGGCGAAGCTCCACTCACATGTCGAAATCAGGGCATTAGGGTTTTTCCTTCTCACCTGCAACTGCAATTGGCCCTTTGGAAGATGGTTCCACAGTCAGTGATAACGCAAGTCTCCGATTCAAGTGGCGTGAATGCGATATCAAACGTTTCTTCTTCTGGCTACGGATTCTACGATTGGCTGTTCAAATGTCACGGATTCTGGCACAATGCCACTCTCATCATCCCCTCCTTCCTCTTCGTCTTCTACTTGGCACTTCAAGCCAGGCACAGCTTACTCAAAGTTTCCCTCGCACGCTCCTATATCATCATTTCGTATAACCTTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAGGCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTGTTTACTACTTCCGGAATGCTGTTTTTGGAAGTGAGCTTGCTGGCTTTTTTACTTCAAGGAAATAATGCTGGCGGCTTAGAAGCAATGAAACGAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAGCAAAAATTGCCTTTTACAAGTATGTTGCTATCATGTTCATTTTTAATGCGATTGCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCGGGTTTCTTCGACACGGACTGGGAGTGATGATGTATCAGCTATTAAATTGACGTGTTGCCTCAGAATACTCATCGCAGGGAACTCTGATCAGGACATATTATGTAAATAAAATAACTGTGTTAGCAGATCGGAATATTGTATAAAAAGATGTTTATTTGTAAGCACCTCAATATAGACCTGACGTCAAACGTACATGGAGTTCTCGTCTAATTATTTAGCTAGATATGAGACTGAATAAAATTAACATATATCATTGACATAAATCTACCTCTAGTACATATCACTGACAAAAACCCCCTTAATGCAAAAAACACAACTTAATATAACTAACTTCCAGAAACAAACAAAAGGTTGGACTAATTTGTTTTTCTTCTCAGACTTGTTTAATCACGCAACAACAGAGTTCACAACTAAAACACTCGAGACTCAATTGCCCCCACACCATAAATATTGATCGGCATGGTGACTATAATGAGTTCCTGTTTTACACAAACCTTCAGGTACATGTTTACTCTAAGAACTCTTCTGAACGATTTCTTCAATAAGATCTGCAGCATCCTGAACAGTAGCGATGCTCTGTGCGCTGTCCTCTTCAATGGCAATACCAAATGCTTCCTCAAGTG
>Glyma19g42870.1 sequence type=CDS gene model=Glyma19g42870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTCCACAGTCAGTGATAACGCAAGTCTCCGATTCAAGTGGCGTGAATGCGATATCAAACGTTTCTTCTTCTGGCTACGGATTCTACGATTGGCTGTTCAAATGTCACGGATTCTGGCACAATGCCACTCTCATCATCCCCTCCTTCCTCTTCGTCTTCTACTTGGCACTTCAAGCCAGGCACAGCTTACTCAAAGTTTCCCTCGCACGCTCCTATATCATCATTTCGTATAACCTTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAGGCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTGTTTACTACTTCCGGAATGCTGTTTTTGGAAGTGAGCTTGCTGGCTTTTTTACTTCAAGGAAATAATGCTGGCGGCTTAGAAGCAATGAAACGAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAGGCTATATATCTATTTGTATTTGGGATCCCTTTATTCGTCGACAGCAATGATCATACTCATCATGGGAAGTGGAACTTGTGGGTTGTCCACAAGCTGTTGCTCACTGCTGTTTATGGCTTCATAATGTTTATGTACCATTCCGGATGGAAAGAAACGTTGCCTGCAAAAATTGCCTTTTACAAGTATGTTGCTATCATGTTCATTTTTAATGCGATTGCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCTGAGATGAAAGATGCGGGTTTCTTCGACACGGACTGGGAGTGA >Glyma19g42870.2 sequence type=CDS gene model=Glyma19g42870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTCCACAGTCAGTGATAACGCAAGTCTCCGATTCAAGTGGCGTGAATGCGATATCAAACGTTTCTTCTTCTGGCTACGGATTCTACGATTGGCTGTTCAAATGTCACGGATTCTGGCACAATGCCACTCTCATCATCCCCTCCTTCCTCTTCGTCTTCTACTTGGCACTTCAAGCCAGGCACAGCTTACTCAAAGTTTCCCTCGCACGCTCCTATATCATCATTTCGTATAACCTTTGCCTCTGCCTCGTTACTCTGCTCAATCTCGCTTGGTGTTTCCTCCAGGCATGGGAGTGCACGTCTGGGAGAGAGTTGACATGGAATTTGTTATCCTTGTTTACTACTTCCGGAATGCTGTTTTTGGAAGTGAGCTTGCTGGCTTTTTTACTTCAAGGAAATAATGCTGGCGGCTTAGAAGCAATGAAACGAACTTTTGGTATCTCAACGCTCGTTGTTGGTTTGGATATTCTGCTCAAGCAAAAATTGCCTTTTACAAGTATGTTGCTATCATGTTCATTTTTAATGCGATTGCGACACTTGCTTGTGGCCTTGCTGGTACCCATGCTGCGTTTGCTTTCTGGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTTGTATACAACATTCCTAG
>Glyma19g42870.1 sequence type=predicted peptide gene model=Glyma19g42870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVPQSVITQVSDSSGVNAISNVSSSGYGFYDWLFKCHGFWHNATLIIPSFLFVFYLALQARHSLLKVSLARSYIIISYNLCLCLVTLLNLAWCFLQAWECTSGRELTWNLLSLFTTSGMLFLEVSLLAFLLQGNNAGGLEAMKRTFGISTLVVGLDILLKAIYLFVFGIPLFVDSNDHTHHGKWNLWVVHKLLLTAVYGFIMFMYHSGWKETLPAKIAFYKYVAIMFIFNAIATLACGLAGTHAAFAFWLYRVTVVFYHAFYLPFLYTTFLADFFQEENFHLENVYYSEMKDAGFFDTDWE* >Glyma19g42870.2 sequence type=predicted peptide gene model=Glyma19g42870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVPQSVITQVSDSSGVNAISNVSSSGYGFYDWLFKCHGFWHNATLIIPSFLFVFYLALQARHSLLKVSLARSYIIISYNLCLCLVTLLNLAWCFLQAWECTSGRELTWNLLSLFTTSGMLFLEVSLLAFLLQGNNAGGLEAMKRTFGISTLVVGLDILLKQKLPFTSMLLSCSFLMRLRHLLVALLVPMLRLLSGCIVSLLSFTMHFIFPFCIQHS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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