SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G27290 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:9618590-9620473 REVERSE LENGTH=341 | SoyBase | E_val: 5.00E-92 | ISS |
| GO:0030003 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis | SoyBase | N/A | ISS |
| GO:0070838 | GO-bp | Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| UniRef100_A2Q3H3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peptidase, cysteine peptidase active site n=1 Tax=Medicago truncatula RepID=A2Q3H3_MEDTR | SoyBase | E_val: 3.00E-101 | ISS |
| UniRef100_I1NC36 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NC36_SOYBN | SoyBase | E_val: 2.00E-110 | ISS |
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Glyma19g42771 not represented in the dataset |
Glyma19g42771 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g239300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g42771.1 sequence type=CDS gene model=Glyma19g42771 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTCGGTTTGGCTTTGATGCACCACAAAGTGGACAAGGAGCTAGCAAAGGGAGATGATAGAGCTGCCCTTGCCCTTGTCAAGGATTTGCAGGAAATGCATTTTCCATGTTTGCTTTGCTTCCAAAGATTTTCTGAGGATGCTCTTCCAACTGATTGTTTGCAGGTCTCTTTTGGTGGAGGTATTGGTAGCTTGGTTGTTGATACAATTGTTCACAGCTTCAGTCAGAAATACCACAATAGGGTTATTCAACATGAAGCTGGCCACTTTTTAATTGCCTATCTGGTTGGAATACTTCCTAGAGGATATACTAATTCTAGTTTGGATGCTCTGCAGAAGGAGGGATCCCTGAATATTCAAGCAGGCACAGCCTTTGCGGATTTTGAGTTTCAAGAAGAAACATTGAATAAATTTTCATGTATAGCATTGGCTGGGATGTCTACCGAGTATCTTATATATGGATTTTCTGAAGGAGGTCTGGATGACATAAGAAAGTTGGATTTATTGCTCAAGGGCCTAGGCTTCACACAGAAGAAGTCAGATACTCAAGTTAGATGGTCTTTGCTAAACACAGTCTTGCTCTTGCAGATGCATGAAGCAGCTCGAGCGAAGGTTGCTGAGGCTTTATCAATGGGAAAATCTGTAGGATCCTGCATTGACATTATAGAGAATTCTATCAATGTTTCAGATCTCTAA
>Glyma19g42771.1 sequence type=predicted peptide gene model=Glyma19g42771 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVGLALMHHKVDKELAKGDDRAALALVKDLQEMHFPCLLCFQRFSEDALPTDCLQVSFGGGIGSLVVDTIVHSFSQKYHNRVIQHEAGHFLIAYLVGILPRGYTNSSLDALQKEGSLNIQAGTAFADFEFQEETLNKFSCIALAGMSTEYLIYGFSEGGLDDIRKLDLLLKGLGFTQKKSDTQVRWSLLNTVLLLQMHEAARAKVAEALSMGKSVGSCIDIIENSINVSDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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