Glyma19g42760 - SoyBase

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Report for Sequence Feature Glyma19g42760

Feature Type:	gene_model
Chromosome:	Gm19
Start:	48637520
stop:	48638639
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g42760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G54690	AT	Annotation by Michelle Graham. TAIR10: gamma histone variant H2AX \| chr1:20414607-20415206 REVERSE LENGTH=142	SoyBase	E_val: 4.00E-88	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006334	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleosome assembly	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0000786	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleosome	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
KOG1756	KOG	Histone 2A	JGI		ISS
PTHR23430	Panther	HISTONE H2A	JGI		ISS
PF00125	PFAM	Core histone H2A/H2B/H3/H4	JGI		ISS
UniRef100_C6SV65	UniRef	Annotation by Michelle Graham. Best UniRef hit: Histone H2A n=1 Tax=Glycine max RepID=C6SV65_SOYBN	SoyBase	E_val: 2.00E-93	ISS
UniRef100_C6SV65	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone H2A n=1 Tax=Glycine max RepID=C6SV65_SOYBN	SoyBase	E_val: 2.00E-93	ISS

Expression Patterns of Glyma19g42760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g42760 not represented in the dataset	Glyma19g42760 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g42760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g239200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g42760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g42760

Limit To All Plant Sequences

>Glyma19g42760.1   sequence type=CDS   gene model=Glyma19g42760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCCACCGGTGGTTCTACCAAGGGCGGAAGGGGCAAGCCCAAAGCCTCCAAATCCGTTTCAAGATCGCAGAAAGCTGGTCTCCAATTCCCCGTTGGAAGAATCGCTCGATTCCTTAAGGCTGGGAAATACGCTGAGCGTGTTGGTGCTGGTGCTCCTGTGTACCTCTCTGCAGTGCTCGAGTATCTCGCTGCTGAGGTTTTGGAATTGGCTGGGAATGCTGCTAGGGATAACAAGAAGAATCGTATTGTTCCTAGGCACATTCAGCTTGCTGTGAGGAACGATGAGGAGCTGAGCAAGCTTTTGGGATCTGTTACCATTGCCAATGGAGGTGTCTTGCCGAATATTCATCAGACTCTGCTTCCCAAGAAGGTTGGCAAGGGGAAGGGCGAAATTGGATCAGCTTCTCAAGAGTTTTAG

Predicted protein sequences of Glyma19g42760

Limit To All Plant Sequences

>Glyma19g42760.1   sequence type=predicted peptide   gene model=Glyma19g42760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSTGGSTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF*

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