Report for Sequence Feature Glyma19g42640
Feature Type: gene_model
Chromosome: Gm19
Start: 48556086
stop: 48558218
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g42640
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G05170 AT
Annotation by Michelle Graham. TAIR10: Phosphoglycerate mutase family protein | chr3:1466738-1468219 FORWARD LENGTH=316
SoyBase E_val: 2.00E-143 ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
KOG0235
KOG
Phosphoglycerate mutase
JGI ISS
PTHR23029 Panther
PHOSPHOGLYCERATE MUTASE
JGI ISS
PF00300 PFAM
Phosphoglycerate mutase family
JGI ISS
UniRef100_A2Q5Z6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Phosphoglycerate/bisphosphoglycerate mutase n=1 Tax=Medicago truncatula RepID=A2Q5Z6_MEDTR
SoyBase E_val: 5.00E-163 ISS
UniRef100_I1NC24 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1NC24_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g42640
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g42640
Paralog Evidence Comments
Glyma03g40080 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g42640 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g238100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g42640
Coding sequences of Glyma19g42640
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g42640.1 sequence type=CDS gene model=Glyma19g42640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTGTAGCCACAGCCAGAGAGTGTTACCCAAGAGAATAATTCTGGTGCGTCACGGGGAGTCGCAAGGGAACCTGCAGCCCACCGCATACGACACCATCCCCGACCCCAAGATCCAGCTCACGCCGGAGGGCATTGCCCAGGCACGCCACGCCGGTCACCGCATCCGCCACGTCATCGCCGGCGAGGGTTCCACCAATTGGCGGGTGTACTTCTACGTCTCCCCCTACGCCCGCACCCGATCCACGCTCCGGGAGATTGGTCGCTCCTTCTCCAGAAAGCGCGTGATTGGGGTCAGGGAAGAGTGCCGCATTCGGGAGCAGGATTTCGGCAATTTTCAGGTCCAGGAGCGCATGAACGTCATCAAGGAAACTCGCCAACGCTTCGGAAGGTTCTTCTATCGCTTTCCAGAGGGAGAATCCGCCGCCGACGTCTTCGATCGCGTTTCCAGTTTCCTTGAATCTCTGTGGAGGGATGTTGACATGAACAGGCTTAACCATGATCCTTCTGATGATCTGAATTTGATAATTGTGTCACATGGGCTGGCATCTCGTGTTTTCCTTATGAAGTGGTTCAAGTGGACAGTCGAACAGTTTGAGCTTCTGAATAATTTTGAAAATGGTGAGTTCCGCGTGATCCAGTTGGGGAGTGGTGGAGAGTACAGCTTAGCCGTTCATCACACGGACGAAGAACTACTTGAGTGGGGGCTCTCTCCTGATATGGTAGCTGATCAGAAACGGCGAGCCAGTGCCAGCAAGGGTGACTGGAATGATCCATGTTCCTGGTACCTTGATGCTTTTTTTGATCATCTTCCTGACTCTGACGATGACAATGTGGACAAACATGACGAGACAGATTCTTTGAGTGAATGTTCATAG
Predicted protein sequences of Glyma19g42640
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g42640.1 sequence type=predicted peptide gene model=Glyma19g42640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MCSHSQRVLPKRIILVRHGESQGNLQPTAYDTIPDPKIQLTPEGIAQARHAGHRIRHVIAGEGSTNWRVYFYVSPYARTRSTLREIGRSFSRKRVIGVREECRIREQDFGNFQVQERMNVIKETRQRFGRFFYRFPEGESAADVFDRVSSFLESLWRDVDMNRLNHDPSDDLNLIIVSHGLASRVFLMKWFKWTVEQFELLNNFENGEFRVIQLGSGGEYSLAVHHTDEELLEWGLSPDMVADQKRRASASKGDWNDPCSWYLDAFFDHLPDSDDDNVDKHDETDSLSECS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
