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Report for Sequence Feature Glyma19g42575

Feature Type:gene_model
Chromosome:Gm19
Start:48513462
stop:48517541
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g42575
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G63480AT Annotation by Michelle Graham. TAIR10: ATP binding microtubule motor family protein | chr3:23441065-23443809 REVERSE LENGTH=465 SoyBaseE_val: 2.00E-156ISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0007018GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule-based movement SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003777GO-mf Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
PTHR24115Panther FAMILY NOT NAMED JGI ISS
PTHR24115:SF128Panther SUBFAMILY NOT NAMED JGI ISS
PF00225PFAM Kinesin motor domain JGI ISS
UniRef100_B9RF20UniRef Annotation by Michelle Graham. Most informative UniRef hit: Kinesin heavy chain, putative n=1 Tax=Ricinus communis RepID=B9RF20_RICCO SoyBaseE_val: 9.00E-169ISS
UniRef100_I1MJ78UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJ78_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g42575
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g42575 not represented in the dataset
Glyma19g42575 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g42575
ParalogEvidenceComments
Glyma03g40031 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g42575 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g237500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g42575
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g42575
>Glyma19g42575.1   sequence type=CDS   gene model=Glyma19g42575   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAAATATTACAGTGTGGGCACGCTCTAGGCTTTTGAACTCAAAAGAGAAGCAAAATGGCCATGACTCTTTCTGCATTCGGTGCATAGACACCGAAACTTTCTTTTTCAAGGATGAAAAGGATGAAGAATTCGTGTTTAGCTTTGATATAGTGTTCTACGAACAATCTGAGCAAGCTGATGTGTATCAGTTCCTAGCTCTTCCCGTGATTAGAGATGTTGTTGATGCAATCAATGGGACAATAATCACTTATGGCCAGACTGGAGCTGGGAAGACATATAGTATGGAGGTGGAAAATTATCACCTTAAAATGGCACCTGGTATACTTGAATTTGATGAACAGAAGAAGGGGCTGCTTCCAAGAGTTAGAAAACATATTCAAATTAAATTGTCAATGCTTGAAATCTACATGGAAAAAGAATGGACCTATTTTGATTTATCAAAAGATAATATACAAATTAAGGAGATTAAGTTGCGAGGAATAATGTTGCCTGGTGTTACAGAGATCACTGTACTGGACCCTGCTGAAGCATTGCAAAACCTATCTAGGGGGATAGCTATCCGGGCAGTTGGTGAGACCCAAATGAACGTGGCCAGCAGCAGAAGTCACTGCATTTATATATTCACAATTCTGCAAGAATTTTCCAGAGATAAAAGAATGAGGTCCGGAAAACTAATTCTAGTGGACTTGGCTGGGTCAGAGAAAGTGGAGGAAACAGGTGCTGAAGGAAGAGTTCTGGAGGAAGCTAAGACCATTAACAAATCCTTGTCTGCTCTGGGAAATGTAATAAATTCTATTACGTGTGGTTTGCAAGGAAAAGCAAGCCATATCCCTTATCGTGATTCCAAGCTCACTCGAATTCTTCAGGATGAACTTGTTAGAGGAAATGCTAGAACTGCATTACTCTGTTGTTGCTCACCCTGCGCTTTTAATGCATCCGAGAGTCTGTCCACTCTTCGTTTCGGTAAAAAATGCGACACAAGTTTCAGTACTTCCTCTCCATCTGGCGACGAGTCAAGAGCTAGAGTTTTGAAAAAGTTGAGGGAGAAATTGAATGTTGAAGATGTGATGTTACAAGAGGAATTGCTGATACAAGAAGGCATTCTCTTTGATCCTTCATCAGTAGAAGAGGAGTCAGACATAGAAGACCTCACCTTACAGGCGATATCCTCACTACAAGCCGCCATGGAAAAGCTTACAGCTACTGTTGATGAGGTACGATAA
Predicted protein sequences of Glyma19g42575
>Glyma19g42575.1   sequence type=predicted peptide   gene model=Glyma19g42575   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SNITVWARSRLLNSKEKQNGHDSFCIRCIDTETFFFKDEKDEEFVFSFDIVFYEQSEQADVYQFLALPVIRDVVDAINGTIITYGQTGAGKTYSMEVENYHLKMAPGILEFDEQKKGLLPRVRKHIQIKLSMLEIYMEKEWTYFDLSKDNIQIKEIKLRGIMLPGVTEITVLDPAEALQNLSRGIAIRAVGETQMNVASSRSHCIYIFTILQEFSRDKRMRSGKLILVDLAGSEKVEETGAEGRVLEEAKTINKSLSALGNVINSITCGLQGKASHIPYRDSKLTRILQDELVRGNARTALLCCCSPCAFNASESLSTLRFGKKCDTSFSTSSPSGDESRARVLKKLREKLNVEDVMLQEELLIQEGILFDPSSVEEESDIEDLTLQAISSLQAAMEKLTATVDEVR*






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