Glyma19g42530 - SoyBase

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Report for Sequence Feature Glyma19g42530

Feature Type:	gene_model
Chromosome:	Gm19
Start:	48486181
stop:	48498758
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g42530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G27410	AT	Annotation by Michelle Graham. TAIR10: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein \| chr5:9676362-9682468 FORWARD LENGTH=936	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
KOG0975	KOG	Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily	JGI		ISS
PTHR11825	Panther	SUBGROUP IIII AMINOTRANSFERASE	JGI		ISS
PTHR11825:SF13	Panther		JGI		ISS
PF01063	PFAM	Aminotransferase class IV	JGI		ISS
UniRef100_G7I8Q0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Branched-chain amino acid aminotransferase-like protein n=1 Tax=Medicago truncatula RepID=G7I8Q0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NC12	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NC12_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g42530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g42530

Paralog	Evidence	Comments
Glyma03g40000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g42530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma19g42530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g42530

Limit To All Plant Sequences

>Glyma19g42530.1   sequence type=CDS   gene model=Glyma19g42530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGAGTGCAGTGGAGGTGATTCATTCTTGGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTGCTCAGAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGAGTAACTGGTCTTGATAGACCCTACAGGGAGGAGCTACTCTCCAAAATGGAAGCCGATGGAAATAAGGTCACTAATGACATAATTTTTGGTCCAGGAAAGAAGAAATATAGATTCTGTAAGCATATATCAAAGCAACGGTTACAAGGTTTGACAGATGATCTGATGAAGAAAGGAAAGCACTTCATTCTGATAAGAAATCCTCTTGATATATTGCCATCCTTTGACAAGGTTGTCCCTCCATCTTTCTATGAGTTGGGTTTGGCTGAGCTGGTTTGTATATTCAATGAGCTTCATGAAATTGGAAAGGCACCACCTGTTATTGATGCTGCAGAACTTCAACAAGATCCTGAGGCTACTCTACGTGGTCTCTGTAATGATTTGGAGATTCCTTTTCAACCTGGAATGCTCAAGTGGGAAGCAGGTCCAAAGTCAATAGACGGCTTGTGGGCCCCTTGGTGGTATAAGTCTGTACATAAATCTACTGGTTTTGAGAAACCAAGAAAGTATCCCCAGCCATTTCCTTTTTCTCTCTATGATTTGTTGGAGCAAAGTCTACCCCTGTATAATATGCTTCGACGCCATGTGAAGAAAAAGTCATCTCTTCTGAGCCCTCCTTTACCTAATCCTGATCTTCCTGTTCCTGCAAACGGGAAATTGCTTGCTTGGGTTGGTGATGAGATTCTGCCACGTGATAGTGCAAAGGTTTCTGTGTTTGATTCAGTTGTCCAAGGAGGTGACTCAGTTTGGGAAGGACTTCGAGTGTATAATGGAAAGATATTTAAGCTTGAGGAGCATCTAGACAGGTTGTTTGATTCAGCAAAAGCTTTAGCTTTTGAAAATATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGGAAAAAGGTTTCTTCTGGGATGAGTCCAGCATTCAATCTTTATGGGTGTACATTAATTGTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATAGACGTGGTATAGTTCTTGTAACAGCCACAACGCGCCGTAATTCACCTAATAATTTGGATTCGAAGATTCATCACAATAACCTTCTCAATAACATACTTGCAAAGATTGAAGGCAATAATGCAAAAGCAGATGATGCAATCATGCTCGACCAAGATGGTTATTTATCAGAAACCAATGCAACTAACATTTTTGTTGTTAAAAAAGGCCGTGTTTTGACCCCTCATGCTGATTACTGTCTTCCTGGCATTACTCGTGCAACTGTAATAGATCTTGTGGTGAAAGAACAGTTAACCTTAGAGGAGCGCAGAATCAGCTTGTCAGAAGTGCATACTGCAGATGAGGTATGGACGACTGGAACAATGGGAGAACTAAGCCCGGTAGTGAAGGTTGATGGTCGCATAATTGGCAATGGAGAAGTAGGACCAGTCACTAGAAGGTTGCAAGCTGCTTATAAAAAGTTGACAGAACAGTCTGGTGTACCTATACCAACCTATCTTAAGACTTGA

Predicted protein sequences of Glyma19g42530

Limit To All Plant Sequences

>Glyma19g42530.1   sequence type=predicted peptide   gene model=Glyma19g42530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAESAVEVIHSWSAPRSLSTSLMYSFAQRDDIEVLDEPLYANFLRVTGLDRPYREELLSKMEADGNKVTNDIIFGPGKKKYRFCKHISKQRLQGLTDDLMKKGKHFILIRNPLDILPSFDKVVPPSFYELGLAELVCIFNELHEIGKAPPVIDAAELQQDPEATLRGLCNDLEIPFQPGMLKWEAGPKSIDGLWAPWWYKSVHKSTGFEKPRKYPQPFPFSLYDLLEQSLPLYNMLRRHVKKKSSLLSPPLPNPDLPVPANGKLLAWVGDEILPRDSAKVSVFDSVVQGGDSVWEGLRVYNGKIFKLEEHLDRLFDSAKALAFENIKEAIFRTLIRNGMFDNSHIRLSLTRGKKVSSGMSPAFNLYGCTLIVLAEWKPPVYDNRRGIVLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNAKADDAIMLDQDGYLSETNATNIFVVKKGRVLTPHADYCLPGITRATVIDLVVKEQLTLEERRISLSEVHTADEVWTTGTMGELSPVVKVDGRIIGNGEVGPVTRRLQAAYKKLTEQSGVPIPTYLKT*

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