Report for Sequence Feature Glyma19g42520
Feature Type: gene_model
Chromosome: Gm19
Start: 48477051
stop: 48479307
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g42520
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G72210 AT
Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:27180066-27182268 FORWARD LENGTH=320
SoyBase E_val: 5.00E-82 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
PTHR11534 Panther
MYOGENIC FACTOR
JGI ISS
PTHR11534:SF7 Panther
MYOGENIC FACTOR MYF-5
JGI ISS
PF00010 PFAM
Helix-loop-helix DNA-binding domain
JGI ISS
UniRef100_G7KZP3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH96 n=1 Tax=Medicago truncatula RepID=G7KZP3_MEDTR
SoyBase E_val: 2.00E-130 ISS
UniRef100_I1NC11 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NC11_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g42520
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g42520
Paralog Evidence Comments
Glyma03g39990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g42520 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g236900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g42520
Coding sequences of Glyma19g42520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g42520.1 sequence type=CDS gene model=Glyma19g42520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTGTTTGCCAGAGGGAGAAAGAGGCATGGCACTAGAAGCAGTAGTATATCCCCAACCTCAAGACCCGTTTGGCTACGGAATCAAAGACCCTTCTTACAACTACAACAACTTGTTAGAAGGTGGTGGAGGCAACTGGGGCTTTGAAAAAGAAGAGCAAGGTTTTGTCACTTTTCTGGAGAACCAAACAGAGAATTATCCTTATGGAGAATGGAACTGTTCTCCTTCTCCACCATCCATGTTGCCTCACTTGAATGCATCAAATCCTCAGTCTTCAGAAACCAGCAACATACATAACAACTTAGATAGTTCAATTTCCACCCCTGCTCGTCCCAAAAGGCGCAGAACCAAAAGCAGGAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACTCACATTGCTGTAGAGCGCAACAGAAGGAAGCAAATGAACGAGTATCTCTCTGTTCTTCGCTCTCTAATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCTATAATTGGGGGTGCTATCAACTTTGTTAAGGAGCTGGAGCAGAGGCTGCAATTTCTTGGTGGTCAGAAAGAGAAAGAGGAGAAATCTGATGTGCCCTTTTCTGAGTTCTTCTCCTTTCCACAGTACTCAACAAGTGCCGGTGGGGGCTGCGACAATTCTACAGCCATGAGTGAGCAAAAGTGTGAGGCTCAGTCTGGCATTGCTGACATAGAAGTGACAATGGTAGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGGCCAAAGCAGCTCTTGAAAATAGTCTCTAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAATGTTACCACCACAGGGGAAATTGTCCTCTATTCTCTTAGTGTTAAGGTGGAAGAAGATTGCAAGCTGGGATCAGTGGATGAGATAGCTGCAGCAGTGTACCAAATGCTGGATAGGATTCAACAAGAGTCAATCTTGAATTAA
Predicted protein sequences of Glyma19g42520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g42520.1 sequence type=predicted peptide gene model=Glyma19g42520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MCLPEGERGMALEAVVYPQPQDPFGYGIKDPSYNYNNLLEGGGGNWGFEKEEQGFVTFLENQTENYPYGEWNCSPSPPSMLPHLNASNPQSSETSNIHNNLDSSISTPARPKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQFLGGQKEKEEKSDVPFSEFFSFPQYSTSAGGGCDNSTAMSEQKCEAQSGIADIEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMRLTILHLNVTTTGEIVLYSLSVKVEEDCKLGSVDEIAAAVYQMLDRIQQESILN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
