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Report for Sequence Feature Glyma19g42420

Feature Type:gene_model
Chromosome:Gm19
Start:48406698
stop:48408616
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g42420
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G54860AT Annotation by Michelle Graham. TAIR10: Glycoprotein membrane precursor GPI-anchored | chr1:20457522-20458434 REVERSE LENGTH=200 SoyBaseE_val: 4.00E-44ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0016114GO-bp Annotation by Michelle Graham. GO Biological Process: terpenoid biosynthetic process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0031225GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_C6SYG6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SYG6_SOYBN SoyBaseE_val: 3.00E-143ISS
UniRef100_Q2HTL7UniRef Annotation by Michelle Graham. Most informative UniRef hit: GPI-anchored protein, putative n=1 Tax=Medicago truncatula RepID=Q2HTL7_MEDTR SoyBaseE_val: 8.00E-83ISS

Expression Patterns of Glyma19g42420
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g42420
ParalogEvidenceComments
Glyma03g39860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g42420 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g236100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g42420
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g42420
>Glyma19g42420.1   sequence type=CDS   gene model=Glyma19g42420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGACGTTTTCAAACTTTGCATCTTCCTTCTTGCACTCTTCTGTGCTTTCCTAGTCTTTTCTAATCCAGTGCTGTGTAGTGATAAGGAGGACAGTGTATTCAAGGGAATCAACAGCTACAGGCAGACACGGAACCTGGCACCCCTGAACCAAGTTTCAAAGGCAACATGTTTGGCTGATGAGGTTGCAGAAGAAATAGATAACATGCCCTGTGAAAACGTGAATCAATACTACCCTTCATCTGTTCCTGGAAGTGGGAACCTCAAAATCCCAAACTTGCAGAAGCATATAGATAAATGTGACATTAACTTCAACAGCACTACAGATGGAGTCATTCTTCCCGTTTGTGTCTCCAAATTGGAACCAACCATTGTGCTCTCCAATTACACTCATTCTGGTAGCTACGCACAGTTTCTCAACAATTCCAAGTACACAGGGGCAGGGCTTGGTTCTGAGGATGATTGGATGGTTCTTGTTCTGACCACCAACACTACCACTGGAAGTTTCTCTGCTGCTGCAACTTCTGTTCGTGCTAATGCTGCTTCTGTGGAGTTCTTGCTCTTTGTTTTGCTGCTTGTGCTCATCAACTACCTTGATTGA
Predicted protein sequences of Glyma19g42420
>Glyma19g42420.1   sequence type=predicted peptide   gene model=Glyma19g42420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDVFKLCIFLLALFCAFLVFSNPVLCSDKEDSVFKGINSYRQTRNLAPLNQVSKATCLADEVAEEIDNMPCENVNQYYPSSVPGSGNLKIPNLQKHIDKCDINFNSTTDGVILPVCVSKLEPTIVLSNYTHSGSYAQFLNNSKYTGAGLGSEDDWMVLVLTTNTTTGSFSAAATSVRANAASVEFLLFVLLLVLINYLD*






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