Glyma19g42410 - SoyBase

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Report for Sequence Feature Glyma19g42410

Feature Type:	gene_model
Chromosome:	Gm19
Start:	48398320
stop:	48402297
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g42410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G27490	AT	Annotation by Michelle Graham. TAIR10: Integral membrane Yip1 family protein \| chr5:9703130-9704653 REVERSE LENGTH=282	SoyBase	E_val: 4.00E-166	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3114	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12822	Panther	UNCHARACTERIZED	JGI		ISS
PF04893	PFAM	Yip1 domain	JGI		ISS
UniRef100_D7M640	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Integral membrane Yip1 family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M640_ARALL	SoyBase	E_val: 9.00E-165	ISS
UniRef100_I1NC02	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NC02_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g42410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g42410

Paralog	Evidence	Comments
Glyma03g39850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g42410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g235900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g42410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g42410

Limit To All Plant Sequences

>Glyma19g42410.1   sequence type=CDS   gene model=Glyma19g42410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCCGGAAAATATACGTCGATTGACGCGCAGCAGCTTCAGGGATCTGTTCCTGCCGTTCCAGATTCACGACCCGCCACCGTCAATTTCGCAGATTCAAATCTTCAGACATTTCCTCCATCTGGTCCTCTGGGCAAGATTACTGCTGCTTCCGGGCCTCCTCGTGACGCTGATGATTCATTTTCAAAACCTGTATCTGGTTCTGATGAACCCCAGCAGGGTGGTTGGTTTCAGACTTTTACAATTGCTGCTTACAAACCATACTTTGATGTTGACACTTCAGATGTTCTGGAGAGGATTATCGACTCACTATTTCCATTTAGAGGATCTTTCAATGAAAAAACTGCTACCAACCCTGATTTGTATGGTCCATTCTGGATTTGCACTACCTTAATATTTGTTGCGGCATCTATTGGCACCTTTGTGACATATGTAGCACACAAGCTGAAGAGCAAGGAATGGGATTATGACATTAATCTGGTGACTTGGTCTGCTGGTTTGTTTTATGGATATGTTACCATTGTTCCCCTTTGCCTGTATGTAATCCTCAAATACTTCTCTGCACCGGCTGGCCTTGTGCAACTATTCTGTCTGTATGGGTATTCCCTGTTTGTCTTTATTCCGGCCCTGTGTATGTCCGTTGTGCCACTGGATATATTTAGATGGGTGGTTGCAGGTGTGGCAGGGTTCATGTCAGCAACATTTGTGGCACTGAACCTCCGGGCACATATCAAATCAGCAGGTGAAAGGTGGTTCTTGATTGTTGCTGGCATTTTTCTGTTGCAGCTGGCTCTAGCTGTTGTACTAAAGATTTACCTCTTCACAGTATCAGTTTAA

Predicted protein sequences of Glyma19g42410

Limit To All Plant Sequences

>Glyma19g42410.1   sequence type=predicted peptide   gene model=Glyma19g42410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSGKYTSIDAQQLQGSVPAVPDSRPATVNFADSNLQTFPPSGPLGKITAASGPPRDADDSFSKPVSGSDEPQQGGWFQTFTIAAYKPYFDVDTSDVLERIIDSLFPFRGSFNEKTATNPDLYGPFWICTTLIFVAASIGTFVTYVAHKLKSKEWDYDINLVTWSAGLFYGYVTIVPLCLYVILKYFSAPAGLVQLFCLYGYSLFVFIPALCMSVVPLDIFRWVVAGVAGFMSATFVALNLRAHIKSAGERWFLIVAGIFLLQLALAVVLKIYLFTVSV*

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