Glyma19g42400 - SoyBase

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Report for Sequence Feature Glyma19g42400

Feature Type:	gene_model
Chromosome:	Gm19
Start:	48394277
stop:	48397788
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g42400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48240	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 402 Blast hits to 382 proteins in 162 species: Archae - 0; Bacteria - 4; Metazoa - 139; Fungi - 111; Plants - 54; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink). \| chr5:19559301-19561153 FORWARD LENGTH=309	SoyBase	E_val: 1.00E-86	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2974	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR13245	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13245:SF1	Panther	gb def: Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIF21	JGI		ISS
PF07890	PFAM	Rrp15p	JGI		ISS
UniRef100_F4WGD7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RRP15-like protein n=1 Tax=Acromyrmex echinatior RepID=F4WGD7_ACREC	SoyBase	E_val: 8.00E-10	ISS
UniRef100_I1NBZ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBZ9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g42400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g42400 not represented in the dataset	Glyma19g42400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g42400

Paralog	Evidence	Comments
Glyma03g39840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g42400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g235800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g42400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g42400

Limit To All Plant Sequences

>Glyma19g42400.4   sequence type=transcript   gene model=Glyma19g42400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTAAATTCGAGAGCACCCAAATATGAACTAGGATCCACCACACTACCCGATCCATAACACATCGACCCGTGCATGGTCTCAGTAATCAAACCCTTACCGCGTTCCCCACTCTGCCATCGCAAACCCTTCCCCTCACAGAGTTCGTCAATTCTTTCGGTGCCTTATTTGTTCTTTGTTGCTGTTATTGTGTTGTACAAGTACAAGTTCAATTTCAATGTTGAAGTTTATTAGTTGAATAATAGAACAGTCCATGGCTGAAGAAATGACAATGGTAGAACCTGGAAGAGGTAAGAGGAAATTTTTTAAAAAGCAAGGCCATAAAAAGTCAAGTAATAAAGCAAAAGTGATGCCACCACAACATGGACAGAAGAAAGTTAAAATAGACAAAAAAATGAAGAAACTTTTCCGCAAGCGTGCACGAGAGTATAATTCTGATGATGAAGATGAGGAGGCCACTGTACCTGCTACCTCAGAGCCTAAAGGTCTGGCATCTATCACCAATAAAAGAAATGACGAGGATGACACAGAAAGTGAGGATGGGTCTGAGGATGAAGGAGCTGCAGGACCACAAAAAACATGGAATAAGAATGCTACTGATATGAATAACCACAGCTCTGATGATGAAGGAGAAGATGATAATGAAATTCAGCCAGGAATTACAAAATTCACTGAAGGATGTAGAGCATTCAAGATGGCCTTTAAGAATATTATGCAGAAGAGTGTTCCTGATGACATGTTGGGTCCAATACTGTCAGGGCAAAGGAAACTTGTTGTAGACAAACTTGCAGAAGAGGAAGCAGAAAGCAAGGTCAAGGGAGAGGCCAAAAAAGAAAAGAAGATGTTGGCAGAAAAGGGGCATGTCAAACCTGCTACATACTTGGATTCACATGAAAAGTTTTTAATAAGTGTTGCTACAAAAGGAGTGGTCAAGCTGTTCAATGCTGTAAATAAGGCACAAACTGCTCAGAAAGGACTGAACCCCTCAAGGACTAAGGATGCAAAAGAGATACGAAAACGAACCAAACAGGCCTTCTTTTCAGAGTTAGGGAAACCATCATTGCCTGCAATTGGCACCACTACAAAGGCCAAGGAAAGCACTGACAGGGTAGAAGATGAACAACCTGCTTGGGCTCCATTACGAGATAATTATATGCTGACAAGTTCAAGGCTAAAGGATTGGGACAAAATGCCTGATAAAAATGTATCAGATGACATGGGAAAAACTTCTGAAGATAGTAGTTCAGATGAAGATTAGTATTTTAGAACTCGAGCAAGCAGAATTGAGATATTCATGGTGGGACAATCTGTCAGTTTTTGAATATTGGTACTGTTCTAGTTGTTACTGGCATAGGAATATCTTATCCATACATTTTGTTGCCATTGGTGTACCAATACGAGCAATGAATCACCTCCAGTAAAATTCCTCCTCATTCTGTTACTCTACACCATTCTCCTCATTGTTTCCAAATGATCCAATTGATTAATGAATATTATTAAATTTAACTAGTTTTTAACTTAGACTCA

>Glyma19g42400.5   sequence type=transcript   gene model=Glyma19g42400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGATCCACCACACTACCCGATCCATAACACATCGACCCGTGCATGGTCTCAGTAATCAAACCCTTACCGCGTTCCCCACTCTGCCATCGCAAACCCTTCCCCTCACAGAGTTGAAGTTTATTAGTTGAATAATAGAACAGTCCATGGCTGAAGAAATGACAATGGTAGAACCTGGAAGAGGTAAGAGGAAATTTTTTAAAAAGCAAGGCCATAAAAAGTCAAGTAATAAAGCAAAAGTGATGCCACCACAACATGGACAGAAGAAAGTTAAAATAGACAAAAAAATGAAGAAACTTTTCCGCAAGCGTGCACGAGAGTATAATTCTGATGATGAAGATGAGGAGGCCACTGTACCTGCTACCTCAGAGCCTAAAGGTCTGGCATCTATCACCAATAAAAGAAATGACGAGGATGACACAGAAAGTGAGGATGGGTCTGAGGATGAAGGAGCTGCAGGACCACAAAAAACATGGAATAAGAATGCTACTGATATGAATAACCACAGCTCTGATGATGAAGGAGAAGATGATAATGAAATTCAGCCAGGAATTACAAAATTCACTGAAGGATGTAGAGCATTCAAGATGGCCTTTAAGAATATTATGCAGAAGAGTGTTCCTGATGACATGTTGGGTCCAATACTGTCAGGGCAAAGGAAACTTGTTGTAGACAAACTTGCAGAAGAGGAAGCAGAAAGCAAGGTCAAGGGAGAGGCCAAAAAAGAAAAGAAGATGTTGGCAGAAAAGGGGCATGTCAAACCTGCTACATACTTGGATTCACATGAAAAGTTTTTAATAAGTGTTGCTACAAAAGGAGTGGTCAAGCTGTTCAATGCTGTAAATAAGGCACAAACTGCTCAGAAAGGACTGAACCCCTCAAGGACTAAGGATGCAAAAGAGATACGAAAACGAACCAAACAGGCCTTCTTTTCAGAGTTAGGGAAACCATCATTGCCTGCAATTGGCACCACTACAAAGGCCAAGGAAAGCACTGACAGGGTAGAAGATGAACAACCTGCTTGGGCTCCATTACGAGATAATTATATGCTGACAAGTTCAAGGCTAAAGGATTGGGACAAAATGCCTGATAAAAATGTATCAGATGACATGGGAAAAACTTCTGAAGATAGTAGTTCAGATGAAGATTAGTATTTTAGAACTCGAGCAAGCAGAATTGAGATATTCATGGTGGGACAATCTGTCAGTTTTTGAATATTGGTACTGTTCTAGTTGTTACTGGCATAGGAATATCTTATCCATACATTTTGTTGCCATTGGTGTACCAATACGAGCAATGAATCACCTCCAGTAAAATTCCTCCT

Coding sequences of Glyma19g42400

Limit To All Plant Sequences

>Glyma19g42400.2   sequence type=CDS   gene model=Glyma19g42400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAAGAAATGACAATGGTAGAACCTGGAAGAGGTAAGAGGAAATTTTTTAAAAAGCAAGGCCATAAAAAGTCAAGTAATAAAGCAAAAGTGATGCCACCACAACATGGACAGAAGAAAGTTAAAATAGACAAAAAAATGAAGAAACTTTTCCGCAAGCGTGCACGAGAGTATAATTCTGATGATGAAGATGAGGAGGCCACTGTACCTGCTACCTCAGAGCCTAAAGGTCTGGCATCTATCACCAATAAAAGAAATGACGAGGATGACACAGAAAGTGAGGATGGGTCTGAGGATGAAGGAGCTGCAGGACCACAAAAAACATGGAATAAGAATGCTACTGATATGAATAACCACAGCTCTGATGATGAAGGAGAAGATGATAATGAAATTCAGCCAGGAATTACAAAATTCACTGAAGGATGTAGAGCATTCAAGATGGCCTTTAAGAATATTATGCAGAAGAGTGTTCCTGATGACATGTTGGGTCCAATACTGTCAGGGCAAAGGAAACTTGTTGTAGACAAACTTGCAGAAGAGGAAGCAGAAAGCAAGGTCAAGGGAGAGGCCAAAAAAGAAAAGAAGATGTTGGCAGAAAAGGGGCATGTCAAACCTGCTACATACTTGGATTCACATGAAAAGTTTTTAATAAGTGTTGCTACAAAAGGAGTGGTCAAGCTGTTCAATGCTGTAAATAAGGCACAAACTGCTCAGAAAGGACTGAACCCCTCAAGGACTAAGGATGCAAAAGAGATACGAAAACGAACCAAACAGGCCTTCTTTTCAGAGTTAGGGAAACCATCATTGCCTGCAATTGGCACCACTACAAAGGCCAAGGAAAGCACTGACAGGGTAGAAGATGAACAACCTGCTTGGGCTCCATTACGAGATAATTATATGCTGACAAGTTCAAGGCTAAAGGATTGGGACAAAATGCCTGATAAAAATGTATCAGATGACATGGGAAAAACTTCTGAAGATAGTAGTTCAGATGAAGATTAG

>Glyma19g42400.4   sequence type=CDS   gene model=Glyma19g42400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAAGAAATGACAATGGTAGAACCTGGAAGAGGTAAGAGGAAATTTTTTAAAAAGCAAGGCCATAAAAAGTCAAGTAATAAAGCAAAAGTGATGCCACCACAACATGGACAGAAGAAAGTTAAAATAGACAAAAAAATGAAGAAACTTTTCCGCAAGCGTGCACGAGAGTATAATTCTGATGATGAAGATGAGGAGGCCACTGTACCTGCTACCTCAGAGCCTAAAGGTCTGGCATCTATCACCAATAAAAGAAATGACGAGGATGACACAGAAAGTGAGGATGGGTCTGAGGATGAAGGAGCTGCAGGACCACAAAAAACATGGAATAAGAATGCTACTGATATGAATAACCACAGCTCTGATGATGAAGGAGAAGATGATAATGAAATTCAGCCAGGAATTACAAAATTCACTGAAGGATGTAGAGCATTCAAGATGGCCTTTAAGAATATTATGCAGAAGAGTGTTCCTGATGACATGTTGGGTCCAATACTGTCAGGGCAAAGGAAACTTGTTGTAGACAAACTTGCAGAAGAGGAAGCAGAAAGCAAGGTCAAGGGAGAGGCCAAAAAAGAAAAGAAGATGTTGGCAGAAAAGGGGCATGTCAAACCTGCTACATACTTGGATTCACATGAAAAGTTTTTAATAAGTGTTGCTACAAAAGGAGTGGTCAAGCTGTTCAATGCTGTAAATAAGGCACAAACTGCTCAGAAAGGACTGAACCCCTCAAGGACTAAGGATGCAAAAGAGATACGAAAACGAACCAAACAGGCCTTCTTTTCAGAGTTAGGGAAACCATCATTGCCTGCAATTGGCACCACTACAAAGGCCAAGGAAAGCACTGACAGGGTAGAAGATGAACAACCTGCTTGGGCTCCATTACGAGATAATTATATGCTGACAAGTTCAAGGCTAAAGGATTGGGACAAAATGCCTGATAAAAATGTATCAGATGACATGGGAAAAACTTCTGAAGATAGTAGTTCAGATGAAGATTAG

>Glyma19g42400.5   sequence type=CDS   gene model=Glyma19g42400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAAGAAATGACAATGGTAGAACCTGGAAGAGGTAAGAGGAAATTTTTTAAAAAGCAAGGCCATAAAAAGTCAAGTAATAAAGCAAAAGTGATGCCACCACAACATGGACAGAAGAAAGTTAAAATAGACAAAAAAATGAAGAAACTTTTCCGCAAGCGTGCACGAGAGTATAATTCTGATGATGAAGATGAGGAGGCCACTGTACCTGCTACCTCAGAGCCTAAAGGTCTGGCATCTATCACCAATAAAAGAAATGACGAGGATGACACAGAAAGTGAGGATGGGTCTGAGGATGAAGGAGCTGCAGGACCACAAAAAACATGGAATAAGAATGCTACTGATATGAATAACCACAGCTCTGATGATGAAGGAGAAGATGATAATGAAATTCAGCCAGGAATTACAAAATTCACTGAAGGATGTAGAGCATTCAAGATGGCCTTTAAGAATATTATGCAGAAGAGTGTTCCTGATGACATGTTGGGTCCAATACTGTCAGGGCAAAGGAAACTTGTTGTAGACAAACTTGCAGAAGAGGAAGCAGAAAGCAAGGTCAAGGGAGAGGCCAAAAAAGAAAAGAAGATGTTGGCAGAAAAGGGGCATGTCAAACCTGCTACATACTTGGATTCACATGAAAAGTTTTTAATAAGTGTTGCTACAAAAGGAGTGGTCAAGCTGTTCAATGCTGTAAATAAGGCACAAACTGCTCAGAAAGGACTGAACCCCTCAAGGACTAAGGATGCAAAAGAGATACGAAAACGAACCAAACAGGCCTTCTTTTCAGAGTTAGGGAAACCATCATTGCCTGCAATTGGCACCACTACAAAGGCCAAGGAAAGCACTGACAGGGTAGAAGATGAACAACCTGCTTGGGCTCCATTACGAGATAATTATATGCTGACAAGTTCAAGGCTAAAGGATTGGGACAAAATGCCTGATAAAAATGTATCAGATGACATGGGAAAAACTTCTGAAGATAGTAGTTCAGATGAAGATTAG

Predicted protein sequences of Glyma19g42400

Limit To All Plant Sequences

>Glyma19g42400.2   sequence type=predicted peptide   gene model=Glyma19g42400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEMTMVEPGRGKRKFFKKQGHKKSSNKAKVMPPQHGQKKVKIDKKMKKLFRKRAREYNSDDEDEEATVPATSEPKGLASITNKRNDEDDTESEDGSEDEGAAGPQKTWNKNATDMNNHSSDDEGEDDNEIQPGITKFTEGCRAFKMAFKNIMQKSVPDDMLGPILSGQRKLVVDKLAEEEAESKVKGEAKKEKKMLAEKGHVKPATYLDSHEKFLISVATKGVVKLFNAVNKAQTAQKGLNPSRTKDAKEIRKRTKQAFFSELGKPSLPAIGTTTKAKESTDRVEDEQPAWAPLRDNYMLTSSRLKDWDKMPDKNVSDDMGKTSEDSSSDED*

>Glyma19g42400.4   sequence type=predicted peptide   gene model=Glyma19g42400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEMTMVEPGRGKRKFFKKQGHKKSSNKAKVMPPQHGQKKVKIDKKMKKLFRKRAREYNSDDEDEEATVPATSEPKGLASITNKRNDEDDTESEDGSEDEGAAGPQKTWNKNATDMNNHSSDDEGEDDNEIQPGITKFTEGCRAFKMAFKNIMQKSVPDDMLGPILSGQRKLVVDKLAEEEAESKVKGEAKKEKKMLAEKGHVKPATYLDSHEKFLISVATKGVVKLFNAVNKAQTAQKGLNPSRTKDAKEIRKRTKQAFFSELGKPSLPAIGTTTKAKESTDRVEDEQPAWAPLRDNYMLTSSRLKDWDKMPDKNVSDDMGKTSEDSSSDED*

>Glyma19g42400.5   sequence type=predicted peptide   gene model=Glyma19g42400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEMTMVEPGRGKRKFFKKQGHKKSSNKAKVMPPQHGQKKVKIDKKMKKLFRKRAREYNSDDEDEEATVPATSEPKGLASITNKRNDEDDTESEDGSEDEGAAGPQKTWNKNATDMNNHSSDDEGEDDNEIQPGITKFTEGCRAFKMAFKNIMQKSVPDDMLGPILSGQRKLVVDKLAEEEAESKVKGEAKKEKKMLAEKGHVKPATYLDSHEKFLISVATKGVVKLFNAVNKAQTAQKGLNPSRTKDAKEIRKRTKQAFFSELGKPSLPAIGTTTKAKESTDRVEDEQPAWAPLRDNYMLTSSRLKDWDKMPDKNVSDDMGKTSEDSSSDED*

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