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Report for Sequence Feature Glyma19g42390

Feature Type:gene_model
Chromosome:Gm19
Start:48392007
stop:48393038
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g42390
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G05327AT Annotation by Michelle Graham. TAIR10: Cyclin family protein | chr3:1517581-1518399 REVERSE LENGTH=212 SoyBaseE_val: 1.00E-51ISS
GO:0000079GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cyclin-dependent protein kinase activity SoyBaseN/AISS
GO:0010440GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0019901GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase binding SoyBaseN/AISS
KOG1674 KOG Cyclin JGI ISS
PTHR15615Panther UNCHARACTERIZED JGI ISS
PF08613PFAM Cyclin JGI ISS
UniRef100_B9RF55UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cyclin-dependent protein kinase, putative n=1 Tax=Ricinus communis RepID=B9RF55_RICCO SoyBaseE_val: 3.00E-63ISS
UniRef100_I1NBZ8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1NBZ8_SOYBN SoyBaseE_val: 1.00E-104ISS

Expression Patterns of Glyma19g42390
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g42390 not represented in the dataset
Glyma19g42390 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g42390 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g235700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g42390
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g42390
>Glyma19g42390.2   sequence type=CDS   gene model=Glyma19g42390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATCAAATCAGAGACCTATAAATCATTAGAATTGGGTGCACCATCTAAGAGTCATGCCTCAGGGACTCCACTAGTTCTGCTCAACTTGTCTTCCAATTGGGAGAGATCCATTTTGAAGAATGAGAAATTGTTGCTCACAACCAGAAAGAAGAATGATCCCGTTACCATCTTTCATGGGTCCAAAGCACCTAACTTGAGCGTTACACATTACATGGAGCGCATTCTAAAGTACTCTCACTGCAGCCCTTCATGTTTTGTGATTGCTCAAATATACATGGACAGGTTCTTTCAGAAAAAAGGTGGATATCTTACTTCCTTCAATGCACATCGCCTCCTCATCACAAGCGTTATGGTAGCTGTCAAATTTCTTGATGATAAGTACTATAGCAATGCCTACTATGCTAAAGTGGGAGGGGTTAGCACAGAGGAGATGAATAGGATGGAATTGGAGTTTTTGTTTAATTTGGAATTTAGACTCTTCGTGACAACAGAGCTGTTCCTCAAATATTGTGAGAAGCTTGGATAG
Predicted protein sequences of Glyma19g42390
>Glyma19g42390.2   sequence type=predicted peptide   gene model=Glyma19g42390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIKSETYKSLELGAPSKSHASGTPLVLLNLSSNWERSILKNEKLLLTTRKKNDPVTIFHGSKAPNLSVTHYMERILKYSHCSPSCFVIAQIYMDRFFQKKGGYLTSFNAHRLLITSVMVAVKFLDDKYYSNAYYAKVGGVSTEEMNRMELEFLFNLEFRLFVTTELFLKYCEKLG*






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