Glyma19g42380 - SoyBase

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Report for Sequence Feature Glyma19g42380

Feature Type:	gene_model
Chromosome:	Gm19
Start:	48385360
stop:	48389009
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g42380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G54940	AT	Annotation by Michelle Graham. TAIR10: plant glycogenin-like starch initiation protein 4 \| chr1:20481690-20484541 FORWARD LENGTH=557	SoyBase	E_val: 0	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0015020	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucuronosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG1950	KOG	Glycosyl transferase, family 8 - glycogenin	JGI		ISS
PTHR11183	Panther	GLYCOGENIN	JGI		ISS
PTHR11183:SF7	Panther	GLYCOGENIN	JGI		ISS
PF01501	PFAM	Glycosyl transferase family 8	JGI		ISS
UniRef100_G7KYP8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycogenin-1 n=1 Tax=Medicago truncatula RepID=G7KYP8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EA0F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EA0F related cluster n=1 Tax=unknown RepID=UPI000233EA0F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g42380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g42380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g235600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g42380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g42380

Limit To All Plant Sequences

>Glyma19g42380.1   sequence type=CDS   gene model=Glyma19g42380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTAACAAGTCCTCTCCTTCTCGATCTCATTCAAGAATAAAGCGTTTTCTTATTTGTCTCGTACTAATGTCCCTACCCTTATTGTTCTTTGTACTTTCTGAGAAGCAGAAAAGAGTCACCAAAATGCTTGAGGTGGACCCGAAGCCAAGACCAAGACCCGCTTGGTTTGATGTCATAGCAAAAGGTATAATCAATAACAAAAAGAAAATTAAGGTAGGCCTCGTTAATATCGATGCTAGAGTGGATGGTAGCATATTTGAACAATTAGATACACTTGACTCTCAAGTAGATACTATATCTATAGATTTTGATCATGTTGATAAGAATTTGAAATGGGAGGATATTTTTCCCGAATGGATCGATGAAAACGGGAAATGGGGTCAACCCAAGTGCCCAAATTTGCCAATGCCGGCGTTGCAAAATTATGGGGATCTCAATGTTGTGGTAGCAAAAGTTCCATGTGGGATTAGGGATGTGTTTAGGTTGCAAGTTAACTTGGTGGTGGCTAATTTGGCTGTGGAGAGTGGGTGGGTGACCAAGATGGAGAGTGATCATAGGAAAGTTCATGTTGTGTTTGTGGGGTCTTGTGGTCCCATGGTAGAGATTTTCAGATGTGACGACCTTTTGATGCATCGACCTGAATATTGGGTGTACAGGCCCGATTTAAGGAGACTCAAGCACCAAACGCTTATGCCGCTTGGTTCATGCCAAATTGCTCCGGGTTATGCTGAAACAGGTAAAGAGGCATGGAGGATAGACGTTGCACTTACGCGCGTTCCAAAGCTGGCCTACGTAACTGTTCTTCACTCTTCAGAAGCTTATGTTTGTGGTGCAATAGCACTTGCTCAAAGCATCCTTGGAACCCAAACCATGTTTATAGAAACTGACCTAGTCCTACTAGCGGATAACTCCATCGGTCCCCAATCCACGACGGGTCTAAAAGCCGCAGGGTGGAAGATCAAACGCATCCAACGCATCCTAAGCCCCTTCGCCAAAAAGGGTGCATACAACCAGTGGAACTACAGCAAGCTACGAATGTGGCAACTCACAACCTACGACAAAATCATCTTCATAGACTCCGACCTCTTAGTCCTCAGAAGCATCCACCATTTATTCGTGCTCCCTCAGTTATCAGCCGCACCTAACGAGAAAACGCTGTTCAACTCGGGCTTGATGGTAATCGAGCCGTCGCAATGCATGTTCCGGAAAATGATGAACGTGACTTCCAAGGTGCGTTCTTACAACGGCGGCGACCAAGGCTTTCTCAACGAAATCTTCACGTGGTGGCACCGTTTGCCGGCCAAGGTGAATCAGCTCAAGACTTTTCCTAGTAGTGGCCATGGGATGCACGAGCTCCCTGATGACGTGTACGCCGTACACTACCTGGGTCTGAAGCCGTGGATGTGTTATAGGGATTATGATTGTAACTGGGACATGCAGGATCGCCATGTTTTCGCGAGTGACTCGGCTCACAGGAGGTGGTGGCAGGTTTATGATGCCATGCCGAAAGAGTTGCAAGCTTATTGTGGACTCACGGAGAAGATGAATGAAAGGATTGTGAAGTGGAGAAGGATAGCAAGAAATGCTAGTTTTTCCGATGGCCATTGGAAGATTAAGGTCCAGGATCCTAGAAGGGGGAATTATTATTCAGATTAG

Predicted protein sequences of Glyma19g42380

Limit To All Plant Sequences

>Glyma19g42380.1   sequence type=predicted peptide   gene model=Glyma19g42380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASNKSSPSRSHSRIKRFLICLVLMSLPLLFFVLSEKQKRVTKMLEVDPKPRPRPAWFDVIAKGIINNKKKIKVGLVNIDARVDGSIFEQLDTLDSQVDTISIDFDHVDKNLKWEDIFPEWIDENGKWGQPKCPNLPMPALQNYGDLNVVVAKVPCGIRDVFRLQVNLVVANLAVESGWVTKMESDHRKVHVVFVGSCGPMVEIFRCDDLLMHRPEYWVYRPDLRRLKHQTLMPLGSCQIAPGYAETGKEAWRIDVALTRVPKLAYVTVLHSSEAYVCGAIALAQSILGTQTMFIETDLVLLADNSIGPQSTTGLKAAGWKIKRIQRILSPFAKKGAYNQWNYSKLRMWQLTTYDKIIFIDSDLLVLRSIHHLFVLPQLSAAPNEKTLFNSGLMVIEPSQCMFRKMMNVTSKVRSYNGGDQGFLNEIFTWWHRLPAKVNQLKTFPSSGHGMHELPDDVYAVHYLGLKPWMCYRDYDCNWDMQDRHVFASDSAHRRWWQVYDAMPKELQAYCGLTEKMNERIVKWRRIARNASFSDGHWKIKVQDPRRGNYYSD*

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