SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G54940 | AT | Annotation by Michelle Graham. TAIR10: plant glycogenin-like starch initiation protein 4 | chr1:20481690-20484541 FORWARD LENGTH=557 | SoyBase | E_val: 0 | ISS |
| GO:0005982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch metabolic process | SoyBase | N/A | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0015020 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glucuronosyltransferase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| KOG1950 | KOG | Glycosyl transferase, family 8 - glycogenin | JGI | ISS | |
| PTHR11183 | Panther | GLYCOGENIN | JGI | ISS | |
| PTHR11183:SF7 | Panther | GLYCOGENIN | JGI | ISS | |
| PF01501 | PFAM | Glycosyl transferase family 8 | JGI | ISS | |
| UniRef100_G7KYP8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glycogenin-1 n=1 Tax=Medicago truncatula RepID=G7KYP8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EA0F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EA0F related cluster n=1 Tax=unknown RepID=UPI000233EA0F | SoyBase | E_val: 0 | ISS |
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Glyma19g42380 not represented in the dataset |
Glyma19g42380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g235600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g42380.1 sequence type=CDS gene model=Glyma19g42380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTAACAAGTCCTCTCCTTCTCGATCTCATTCAAGAATAAAGCGTTTTCTTATTTGTCTCGTACTAATGTCCCTACCCTTATTGTTCTTTGTACTTTCTGAGAAGCAGAAAAGAGTCACCAAAATGCTTGAGGTGGACCCGAAGCCAAGACCAAGACCCGCTTGGTTTGATGTCATAGCAAAAGGTATAATCAATAACAAAAAGAAAATTAAGGTAGGCCTCGTTAATATCGATGCTAGAGTGGATGGTAGCATATTTGAACAATTAGATACACTTGACTCTCAAGTAGATACTATATCTATAGATTTTGATCATGTTGATAAGAATTTGAAATGGGAGGATATTTTTCCCGAATGGATCGATGAAAACGGGAAATGGGGTCAACCCAAGTGCCCAAATTTGCCAATGCCGGCGTTGCAAAATTATGGGGATCTCAATGTTGTGGTAGCAAAAGTTCCATGTGGGATTAGGGATGTGTTTAGGTTGCAAGTTAACTTGGTGGTGGCTAATTTGGCTGTGGAGAGTGGGTGGGTGACCAAGATGGAGAGTGATCATAGGAAAGTTCATGTTGTGTTTGTGGGGTCTTGTGGTCCCATGGTAGAGATTTTCAGATGTGACGACCTTTTGATGCATCGACCTGAATATTGGGTGTACAGGCCCGATTTAAGGAGACTCAAGCACCAAACGCTTATGCCGCTTGGTTCATGCCAAATTGCTCCGGGTTATGCTGAAACAGGTAAAGAGGCATGGAGGATAGACGTTGCACTTACGCGCGTTCCAAAGCTGGCCTACGTAACTGTTCTTCACTCTTCAGAAGCTTATGTTTGTGGTGCAATAGCACTTGCTCAAAGCATCCTTGGAACCCAAACCATGTTTATAGAAACTGACCTAGTCCTACTAGCGGATAACTCCATCGGTCCCCAATCCACGACGGGTCTAAAAGCCGCAGGGTGGAAGATCAAACGCATCCAACGCATCCTAAGCCCCTTCGCCAAAAAGGGTGCATACAACCAGTGGAACTACAGCAAGCTACGAATGTGGCAACTCACAACCTACGACAAAATCATCTTCATAGACTCCGACCTCTTAGTCCTCAGAAGCATCCACCATTTATTCGTGCTCCCTCAGTTATCAGCCGCACCTAACGAGAAAACGCTGTTCAACTCGGGCTTGATGGTAATCGAGCCGTCGCAATGCATGTTCCGGAAAATGATGAACGTGACTTCCAAGGTGCGTTCTTACAACGGCGGCGACCAAGGCTTTCTCAACGAAATCTTCACGTGGTGGCACCGTTTGCCGGCCAAGGTGAATCAGCTCAAGACTTTTCCTAGTAGTGGCCATGGGATGCACGAGCTCCCTGATGACGTGTACGCCGTACACTACCTGGGTCTGAAGCCGTGGATGTGTTATAGGGATTATGATTGTAACTGGGACATGCAGGATCGCCATGTTTTCGCGAGTGACTCGGCTCACAGGAGGTGGTGGCAGGTTTATGATGCCATGCCGAAAGAGTTGCAAGCTTATTGTGGACTCACGGAGAAGATGAATGAAAGGATTGTGAAGTGGAGAAGGATAGCAAGAAATGCTAGTTTTTCCGATGGCCATTGGAAGATTAAGGTCCAGGATCCTAGAAGGGGGAATTATTATTCAGATTAG
>Glyma19g42380.1 sequence type=predicted peptide gene model=Glyma19g42380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASNKSSPSRSHSRIKRFLICLVLMSLPLLFFVLSEKQKRVTKMLEVDPKPRPRPAWFDVIAKGIINNKKKIKVGLVNIDARVDGSIFEQLDTLDSQVDTISIDFDHVDKNLKWEDIFPEWIDENGKWGQPKCPNLPMPALQNYGDLNVVVAKVPCGIRDVFRLQVNLVVANLAVESGWVTKMESDHRKVHVVFVGSCGPMVEIFRCDDLLMHRPEYWVYRPDLRRLKHQTLMPLGSCQIAPGYAETGKEAWRIDVALTRVPKLAYVTVLHSSEAYVCGAIALAQSILGTQTMFIETDLVLLADNSIGPQSTTGLKAAGWKIKRIQRILSPFAKKGAYNQWNYSKLRMWQLTTYDKIIFIDSDLLVLRSIHHLFVLPQLSAAPNEKTLFNSGLMVIEPSQCMFRKMMNVTSKVRSYNGGDQGFLNEIFTWWHRLPAKVNQLKTFPSSGHGMHELPDDVYAVHYLGLKPWMCYRDYDCNWDMQDRHVFASDSAHRRWWQVYDAMPKELQAYCGLTEKMNERIVKWRRIARNASFSDGHWKIKVQDPRRGNYYSD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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