SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G05330 | AT | Annotation by Michelle Graham. TAIR10: cyclin family | chr3:1519162-1521159 REVERSE LENGTH=444 | SoyBase | E_val: 2.00E-82 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0000914 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phragmoplast assembly | SoyBase | N/A | ISS |
| GO:0007108 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis, initiation of separation | SoyBase | N/A | ISS |
| GO:0016572 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone phosphorylation | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005875 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: microtubule associated complex | SoyBase | N/A | ISS |
| GO:0009574 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: preprophase band | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_G7KYN9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Microtubule binding protein n=1 Tax=Medicago truncatula RepID=G7KYN9_MEDTR | SoyBase | E_val: 4.00E-129 | ISS |
| UniRef100_I1NBZ4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBZ4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g42350 not represented in the dataset |
Glyma19g42350 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g39770 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g235300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g42350.1 sequence type=CDS gene model=Glyma19g42350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTGCTAGAAGCCCACCAAAGCATAACAAAATGTTAGCTGTTCTCAATCGTTCTCTAATCAGAGAAACACTCAACAAGGTGGATCAGTGCATGGTTCGATTACAAGAACTTCAGTACACGGTGGCCGGTGGAAATAAGGTTGTCTCAGGGGTAAGTCTCAGCCCTCGCAGCACCAGAGGTTATCTGCGAACCAGTCTAAGGTGCAAGCAAGAATCAGTCAGGATCAAGCATGATGCACCAAGAAGATCTCCACCGGGGAAGTTTCCTAAGCCAACAAATTCAGAAGGTAAAGAATGGAGGCAAATGTCACTGCCTTCAATGCTTGTTGGCGAAACTGTTGGAGAAATTTTAAAGGCAAGTCAATTTGCCAGCGAAATAGTCTCAGCAGTTAGTAGGAAAACTGCCACCAAGGAACCAAAAACTCCACAGTCCCAACGGTCAAACCAGAAAGTTGACACTGAAAACACACAACTCAATGCTAGAAGGAGGAAAGAGAAGCAAATTAAACCACTTTCTGATACCCCACCATCTCAATGGGCTCGTTCAAGGATTAACTTCAAGGTTTCTCCTCCAAAAAGAACAGTAGAGTTTGACAAAGAGAATAATAACAAGTGTTTGCCAAATAGGGCATGTGCTAGCAGTAGTACTAACAAGACAGTGCTTGTCCCCAAACCTTTATTCTTGTCTACACATTCTTCAAGGCAACAACTATTTTGCAAGACAAAATCTCATGTCATATCAAGAAACATAGGAACACAACAAAAGTGTTTGATCATGTCCCCACCTTCAGCAGCTTCCAAAGTTCAAGTCAAAGTAAAAAACCCATCAATTATGTTTATTTCTTCTTCACCCACAAGACCTACAAATACAAGTTTGAGTTTGAGCAAGAAGAGTTCTCCAACAAAGAGATGGGTTCGAACTTTCTCTCCTAGAGTGGCAACAAGATTATTAGCTTCACCAATAAAGAGCAAGAAAACTGTGCAAAAAAGTGATGGGGTAGTAAATTTGAGGAAGTGTTCTCCAAAGAGATCAGTTGCATCAAAACTATGTCGATCTTTCTCTCCTTCAAGGCTGGCAACAAGATTTGTTTCACCATTGAAGAGCAGGAAAAGGGCACAGCAAAGCGATGGGTTAGTAAGTGGATTGAAACAACGCCCAGCAAAGTGA
>Glyma19g42350.1 sequence type=predicted peptide gene model=Glyma19g42350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVARSPPKHNKMLAVLNRSLIRETLNKVDQCMVRLQELQYTVAGGNKVVSGVSLSPRSTRGYLRTSLRCKQESVRIKHDAPRRSPPGKFPKPTNSEGKEWRQMSLPSMLVGETVGEILKASQFASEIVSAVSRKTATKEPKTPQSQRSNQKVDTENTQLNARRRKEKQIKPLSDTPPSQWARSRINFKVSPPKRTVEFDKENNNKCLPNRACASSSTNKTVLVPKPLFLSTHSSRQQLFCKTKSHVISRNIGTQQKCLIMSPPSAASKVQVKVKNPSIMFISSSPTRPTNTSLSLSKKSSPTKRWVRTFSPRVATRLLASPIKSKKTVQKSDGVVNLRKCSPKRSVASKLCRSFSPSRLATRFVSPLKSRKRAQQSDGLVSGLKQRPAK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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