SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G09020 | AT | Annotation by Michelle Graham. TAIR10: homolog of yeast sucrose nonfermenting 4 | chr1:2900149-2904212 REVERSE LENGTH=487 | SoyBase | E_val: 0 | ISS |
| GO:0042149 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to glucose starvation | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0030295 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activator activity | SoyBase | N/A | ISS |
| KOG1764 | KOG | 5'-AMP-activated protein kinase, gamma subunit | JGI | ISS | |
| PTHR13780 | Panther | AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT | JGI | ISS | |
| PTHR13780:SF13 | Panther | AMP-ACTIVATED PROTEIN KINASE-RELATED | JGI | ISS | |
| PF00571 | PFAM | CBS domain | JGI | ISS | |
| UniRef100_I1NBY9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBY9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q84PE0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AKIN betagamma n=1 Tax=Medicago truncatula RepID=Q84PE0_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma19g42290 not represented in the dataset |
Glyma19g42290 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g39690 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g234600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g42290.1 sequence type=CDS gene model=Glyma19g42290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGCTTCTGTTGTGGATGGGGCTTGTGAGGGGAGTGGAGTTTCAGGACCCATTTTGATTCCACGGCGCTTTGTTTGGCCTTATGGGGGAACAACGGTGTTTCTAACTGGTTCTTTCACGAGATGGTCGAACCATATAGCTATGTCTCCGATGGAGGGATGCCCTGCTGTGTTTCAAGTTGTTTGCAACTTAATGCCGGGGTTTCATCAGTACAAATTTAATGTAGATGGTGAGTGGCGGCACGATGATCAGCAGCCATTTGTAAATGGGAGCTGTGGAGTAGTGAATACTATTTATATAGTGAGAGAACCAGATATCTTACCTTCCATTTTAAATACTGAAACACCTGGTCGATCACACATGGAGGTTGACAATATGGAAGCTAATCCCAGGATGCCTGTGTCTGATCTGGAGGTCTCTCGCCACCGTATATCTGTATTCCTGTCCACGCATACTGCATATAATTTGCTTCCCGAGTCAGGAAAGGTCATTGCCTTGGATATAAATTTACCAGTTAAGCAAGCATTCCATGTTCTTTATGAACAGGGTGTATCTATGGCTCCTCTATGGGATTTTTTCAAGAGCCAGTTCGTTGGAGTTCTTAGTGCAATGGACTTCATTCTAATATTGAAAGAGCTGGGGAATCATGGTTCAAATTTGACTCAAGAACAACTTGAGACTCATACTATAGCCGCCTGGAAAGAGGGAAAATTTCAACAATTCAGAACACTTGATAGTAATGGGGGATCATATCCTTGGCGATTTGTTCATGCCGGACCCCATGAATGTCTAAAAGATGTGGCTTTGAAGGTTTTGCAAAACAAGGTGTCAACTGTCCCTATCATACATTCTTCTTCAGAGGATGGTTCATATCCTCAACTGCTACATCTTGCTTCCCTATCCGGAATACTAAAAGGTATATGCAGGCATTTTAAGCACTCCTTGAGTTCTTTGCCCATTCTTCAACTTCCAGTGGCTTCAATACCTTTGGGTACATGGATGCCTAGAGTTGGGGAACCAAATGGTCGGCCACTAGCAATGTTGATGCCAAGTGCTTCTCTCGGTGCTGCTTTGTCTATGTTTGTTCAAGCCAAAGTTAGCTCAATACCGATTGTGGATGCTAATGATTCGTTGCTTGACATTTATTCAAGAAGCGATATTACTGCATTGGCTAAAGATAAAGCTTATGCTAGGATATCTCTCGATGAAATTAGTATTCACCAGGCATTGCTTTTGGGACAAGATGCAACCTCTCCTTCTGGGATTTACAATGGTCAGAGATGTCACATGTGTTTGAGATCTGAATCGTTGTACAAAGTGATGGAGCGGTTGGCTAATCCTGGGGTTAGGAGACTTGTGGTTGTGGAGGCTGGCAGCAAGCGTGTGGAAGGGATTATTTCTTTAAGCGATGTGTTCAGATTCTTGTTAGGCTAG
>Glyma19g42290.1 sequence type=predicted peptide gene model=Glyma19g42290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFASVVDGACEGSGVSGPILIPRRFVWPYGGTTVFLTGSFTRWSNHIAMSPMEGCPAVFQVVCNLMPGFHQYKFNVDGEWRHDDQQPFVNGSCGVVNTIYIVREPDILPSILNTETPGRSHMEVDNMEANPRMPVSDLEVSRHRISVFLSTHTAYNLLPESGKVIALDINLPVKQAFHVLYEQGVSMAPLWDFFKSQFVGVLSAMDFILILKELGNHGSNLTQEQLETHTIAAWKEGKFQQFRTLDSNGGSYPWRFVHAGPHECLKDVALKVLQNKVSTVPIIHSSSEDGSYPQLLHLASLSGILKGICRHFKHSLSSLPILQLPVASIPLGTWMPRVGEPNGRPLAMLMPSASLGAALSMFVQAKVSSIPIVDANDSLLDIYSRSDITALAKDKAYARISLDEISIHQALLLGQDATSPSGIYNGQRCHMCLRSESLYKVMERLANPGVRRLVVVEAGSKRVEGIISLSDVFRFLLG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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